Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RBH91_RS00600 Genome accession   NZ_CP133085
Coordinates   110371..111750 (+) Length   459 a.a.
NCBI ID   WP_076762610.1    Uniprot ID   A0A1R1QXS7
Organism   Bacillus swezeyi strain EA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105371..116750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS00580 - 105740..106204 (+) 465 WP_076762614.1 CtsR family transcriptional regulator -
  RBH91_RS00585 - 106219..106776 (+) 558 WP_076762613.1 UvrB/UvrC motif-containing protein -
  RBH91_RS00590 - 106776..107867 (+) 1092 WP_307893090.1 protein arginine kinase -
  RBH91_RS00595 clpC 107864..110293 (+) 2430 WP_076762611.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  RBH91_RS00600 radA 110371..111750 (+) 1380 WP_076762610.1 DNA repair protein RadA Machinery gene
  RBH91_RS00605 disA 111754..112830 (+) 1077 WP_076762609.1 DNA integrity scanning diadenylate cyclase DisA -
  RBH91_RS00610 - 112958..114046 (+) 1089 WP_307893092.1 PIN/TRAM domain-containing protein -
  RBH91_RS00615 ispD 114062..114757 (+) 696 WP_076762607.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RBH91_RS00620 ispF 114750..115226 (+) 477 WP_076762606.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49773.09 Da        Isoelectric Point: 7.1319

>NTDB_id=871709 RBH91_RS00600 WP_076762610.1 110371..111750(+) (radA) [Bacillus swezeyi strain EA208]
MAKTKTKFICQSCGYESAKWMGKCPGCGAWNTMVEETVKKPAANRRTAFSHSVQTVQKPSPITSIETTEEPRIQTKSGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRMAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANAEGWTKPKGIEIVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=871709 RBH91_RS00600 WP_076762610.1 110371..111750(+) (radA) [Bacillus swezeyi strain EA208]
ATGGCTAAAACAAAAACTAAATTTATCTGTCAATCATGCGGCTATGAATCTGCCAAGTGGATGGGGAAGTGTCCGGGATG
CGGCGCATGGAACACGATGGTCGAAGAAACGGTTAAGAAACCGGCCGCCAACCGAAGAACCGCTTTTTCGCATTCCGTTC
AAACGGTGCAGAAGCCTTCCCCTATTACATCAATTGAAACGACGGAAGAGCCGAGGATACAAACGAAATCGGGCGAATTT
AACCGCGTATTGGGCAATGGCATCGTCAAAGGTTCGCTTGTGTTAATCGGCGGCGACCCCGGCATCGGAAAGTCGACTTT
GCTGCTGCAGGTGTCTGCCCAGCTTGCTGATTCGAAGGAAAATGTCTTGTACATATCAGGGGAAGAGTCAGTTAAACAAA
CAAAGCTGAGGGCGGACCGATTAGGAATCAACAGTCCAACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAATCCTTCATTTGTGGTGGTTGACTCGATTCAAACCGTTTATCAAAGCGATATCACTTCAGC
CCCGGGCAGTGTGTCCCAAGTCAGGGAATGCACCGCAGAGCTGATGAGAATGGCCAAAACAAAAGGAATTCCTATATTTA
TCGTCGGGCATGTGACGAAAGAGGGTTCGATTGCAGGGCCGAGACTGCTGGAACATATGGTCGACACCGTCCTTTACTTT
GAAGGGGAGAGACACCATACTTTCCGCATTCTGAGAGCCGTCAAAAACCGTTTCGGCTCGACAAATGAGATGGGAATTTT
TGAAATGAGGGAAGAAGGTCTGACAGAGGTTCTGAACCCGTCAGAAATTTTTCTGGAAGAACGCTCGGCGGGTGCGGCCG
GATCAAGTGTCGTCGCTTCAATGGAAGGCACGAGGCCGGTCTTAGTCGAAATACAGGCGCTCATCTCACCTACGAGCTTT
GGAAACCCGCGCCGGATGGCAACGGGAATTGATCATAATCGCGTCTCATTGCTCATGGCGGTCTTGGAAAAAAGAGTGGG
GCTTCTTCTTCAAAATCAGGATGCCTATTTAAAAGTGGCCGGCGGAGTGAAGCTGGATGAACCGGCAATTGACCTTGCCG
TTGCGGTCAGCATCGCTTCAAGCTTCAGAGATACCCCGCCTCATCCGACAGATTGTTTTATCGGAGAGGTCGGCTTAACA
GGAGAGGTCCGAAGAGTATCTAGAATTGAACAGAGGGTTCAGGAAGCCGCAAAGCTTGGCTTTAAGAGAATGATTATTCC
TTCTGCGAATGCGGAAGGCTGGACCAAGCCGAAAGGAATTGAGATCGTCGGCGTTGAAAATGTAGCTGAGGCGCTTCGGG
CTTCATTAGGAGGATCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1QXS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

90.611

99.782

0.904
  radA Streptococcus mitis NCTC 12261

62.031

98.693

0.612
  radA Streptococcus pneumoniae Rx1

62.031

98.693

0.612
  radA Streptococcus pneumoniae D39

62.031

98.693

0.612
  radA Streptococcus pneumoniae R6

62.031

98.693

0.612
  radA Streptococcus pneumoniae TIGR4

62.031

98.693

0.612
  radA Streptococcus mitis SK321

61.81

98.693

0.61