Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RBH92_RS05720 Genome accession   NZ_CP133083
Coordinates   1211809..1213239 (+) Length   476 a.a.
NCBI ID   WP_307933658.1    Uniprot ID   -
Organism   Nitrosomonas sp. sh817     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1206809..1218239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH92_RS05695 (RBH92_05695) rpmA 1207872..1208129 (-) 258 WP_307933654.1 50S ribosomal protein L27 -
  RBH92_RS05700 (RBH92_05700) rplU 1208141..1208452 (-) 312 WP_292923721.1 50S ribosomal protein L21 -
  RBH92_RS05705 (RBH92_05705) ispB 1208597..1209565 (+) 969 WP_307933655.1 octaprenyl diphosphate synthase -
  RBH92_RS05710 (RBH92_05710) - 1209929..1210156 (+) 228 WP_307933656.1 PP0621 family protein -
  RBH92_RS05715 (RBH92_05715) - 1210167..1211822 (+) 1656 WP_307933657.1 nitrogen regulation protein NR(II) -
  RBH92_RS05720 (RBH92_05720) pilR 1211809..1213239 (+) 1431 WP_307933658.1 sigma-54 dependent transcriptional regulator Regulator
  RBH92_RS05725 (RBH92_05725) - 1213352..1214371 (-) 1020 WP_307933659.1 COX15/CtaA family protein -
  RBH92_RS05730 (RBH92_05730) smpB 1214424..1214867 (-) 444 WP_292923728.1 SsrA-binding protein SmpB -
  RBH92_RS05735 (RBH92_05735) - 1214954..1215391 (+) 438 WP_307933660.1 type II toxin-antitoxin system RatA family toxin -
  RBH92_RS05740 (RBH92_05740) - 1215378..1215695 (+) 318 WP_307933661.1 RnfH family protein -
  RBH92_RS05745 (RBH92_05745) - 1215671..1215970 (-) 300 WP_307933662.1 SemiSWEET family sugar transporter -
  RBH92_RS05750 (RBH92_05750) - 1216226..1217461 (+) 1236 WP_307933663.1 vanadium-dependent haloperoxidase -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 52677.56 Da        Isoelectric Point: 7.0198

>NTDB_id=871697 RBH92_RS05720 WP_307933658.1 1211809..1213239(+) (pilR) [Nitrosomonas sp. sh817]
MSIASGRDAAASRKNAPPNILIVDDEPDIIELLELTLARMGMDVVSARSLSEARQLLQSRRFQLCLTDMRLSDGEGLDLV
KYIAQFCADLPVAVITAHGTAENAVAALKAGAFDYLVKPVSLKQLRDLVKSALNLPPMAAQSAPPVSAQSNRRVLLGESQ
PMRQLRATIDKLSRSQAAVYISGESGSGKELAARMIHERSARHQQPFVAVNCGAIPENLMESEFFGYKKGAFTGAEKDHD
GFFLAAHGGTLFLDEVADLPLAMQVKLLRVIQEKQVRRIGESQEKNVDVRIISATHKKLNQCVENGQFRQDLYYRLNVIE
LNMPALREMREDIPLIATAILEKLCRDAARPISSFTKGALAMLTDYDYPGNVRELENILERTLALCAEVEIGETELQLPN
STRETKSLSPGAMNFPLPDSDSRLPLQDYLDQLEKDSIVKALNLSRYNRTKAAKTLGITVRSLRYRMERLGLNETA

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=871697 RBH92_RS05720 WP_307933658.1 1211809..1213239(+) (pilR) [Nitrosomonas sp. sh817]
ATGTCAATAGCTAGTGGACGTGATGCGGCTGCATCGCGGAAAAACGCTCCTCCCAATATTCTGATCGTCGATGATGAACC
CGATATTATTGAATTGCTGGAATTGACGCTGGCGCGCATGGGGATGGATGTGGTGAGCGCAAGATCGCTGTCTGAAGCCA
GGCAGTTGTTGCAATCCCGGCGATTTCAATTGTGCCTGACCGACATGCGGCTAAGCGATGGGGAAGGACTGGATCTGGTT
AAATACATCGCGCAATTCTGCGCCGACCTGCCGGTTGCTGTCATTACCGCTCACGGCACGGCAGAAAACGCCGTTGCGGC
GCTCAAAGCGGGGGCCTTTGATTATTTGGTGAAGCCGGTTTCGTTGAAGCAATTGCGCGATCTGGTTAAATCCGCGCTCA
ATTTGCCGCCGATGGCGGCTCAGTCCGCGCCGCCAGTTTCAGCGCAATCGAACCGGCGTGTGTTACTGGGTGAATCGCAA
CCGATGCGCCAGCTTCGCGCCACCATCGATAAGCTTTCCCGCAGCCAAGCCGCGGTCTATATCAGCGGCGAATCCGGCAG
CGGCAAGGAATTGGCGGCGCGCATGATCCATGAGAGAAGCGCGCGTCATCAACAACCGTTTGTTGCGGTGAATTGTGGCG
CAATTCCTGAGAATCTGATGGAAAGCGAATTTTTCGGTTATAAAAAAGGCGCTTTCACCGGTGCTGAAAAAGATCACGAC
GGCTTTTTTCTGGCGGCTCATGGCGGAACTTTGTTTCTTGACGAGGTGGCGGATTTGCCATTGGCGATGCAAGTCAAATT
GCTCAGAGTGATTCAGGAAAAACAAGTCAGACGAATCGGCGAATCGCAAGAAAAGAATGTGGATGTGCGCATCATCAGCG
CAACCCATAAGAAGCTCAATCAGTGCGTCGAGAACGGGCAATTCCGGCAAGATCTGTATTATCGTTTGAACGTCATTGAG
TTGAATATGCCGGCTTTGCGTGAAATGCGCGAGGATATTCCATTGATAGCCACGGCGATACTGGAAAAATTATGCCGCGA
TGCCGCGCGGCCAATCAGCAGTTTTACCAAAGGTGCATTGGCGATGCTGACGGATTATGACTATCCCGGGAATGTCCGTG
AGCTTGAAAATATCCTGGAGCGCACACTTGCGCTGTGCGCGGAAGTGGAAATCGGCGAAACGGAACTGCAGCTCCCCAAT
TCCACAAGAGAAACGAAATCTTTATCTCCGGGTGCGATGAATTTTCCGTTGCCGGATTCCGATTCAAGATTGCCGTTGCA
GGATTATCTCGATCAGCTTGAAAAAGACTCCATTGTCAAGGCATTGAATCTTAGCCGCTATAATCGCACAAAAGCAGCCA
AAACCCTGGGGATTACGGTCAGGTCGCTACGCTACCGGATGGAGCGGCTGGGGCTTAACGAAACTGCATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(155-321)

Response regulator receiver domain (Response_reg)

(20-129)

Bacterial regulatory protein, Fis family (HTH_8)

(430-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.333

95.798

0.559
  pilR Acinetobacter baumannii strain A118

46.137

97.899

0.452