NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	RBI12_RS17055	Genome accession	NZ_CP133054
Coordinates	3548343..3549203 (+)	Length	286 a.a.
NCBI ID	WP_017481949.1	Uniprot ID	A0A6S4VFF3
Organism	Acinetobacter pittii strain A774
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3543343..3554203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBI12_RS17035 (RBI12_17090)	secG	3543950..3544279 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
RBI12_RS17040 (RBI12_17095)	tpiA	3544292..3545086 (-)	795	WP_017481951.1	triose-phosphate isomerase	-
RBI12_RS17045 (RBI12_17100)	pilB	3545378..3547090 (+)	1713	WP_017385371.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RBI12_RS17050 (RBI12_17105)	pilC	3547117..3548343 (+)	1227	WP_017481950.1	type II secretion system F family protein	Machinery gene
RBI12_RS17055 (RBI12_17110)	pilD	3548343..3549203 (+)	861	WP_017481949.1	A24 family peptidase	Machinery gene
RBI12_RS17060 (RBI12_17115)	coaE	3549205..3549801 (+)	597	WP_017398727.1	dephospho-CoA kinase	-
RBI12_RS17065 (RBI12_17120)	-	3549798..3550712 (-)	915	WP_017398726.1	DMT family transporter	-
RBI12_RS17070 (RBI12_17125)	rlmB	3550748..3551497 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RBI12_RS17075 (RBI12_17130)	-	3551600..3551926 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
RBI12_RS17080 (RBI12_17135)	-	3552003..3553313 (-)	1311	WP_017481948.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32119.62 Da Isoelectric Point: 6.4261

                                >NTDB_id=871563 RBI12_RS17055 WP_017481949.1 3548343..3549203(+) (pilD) [Acinetobacter pittii strain A774]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGDCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR

FTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=871563 RBI12_RS17055 WP_017481949.1 3548343..3549203(+) (pilD) [Acinetobacter pittii strain A774]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG

TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA

ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCGATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA

TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT

TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAGTATTTACACCTCGCCTAACTCAGCCATTTGGGG

ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6S4VFF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	53.846	95.455	0.514
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437

Detailed information NTG0871563