Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RBI12_RS10455 Genome accession   NZ_CP133054
Coordinates   2186289..2186669 (-) Length   126 a.a.
NCBI ID   WP_017482272.1    Uniprot ID   A0A9X3QIG5
Organism   Acinetobacter pittii strain A774     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2181289..2191669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS10425 (RBI12_10460) tadA 2181353..2181856 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  RBI12_RS10430 (RBI12_10465) hibch 2181862..2182986 (-) 1125 WP_378216246.1 enoyl-CoA hydratase/isomerase family protein -
  RBI12_RS10435 (RBI12_10470) ung 2182983..2183696 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  RBI12_RS10440 (RBI12_10475) - 2183750..2184346 (-) 597 WP_002121363.1 6-carboxytetrahydropterin synthase -
  RBI12_RS10445 (RBI12_10480) gspK 2184574..2185533 (-) 960 WP_017482270.1 type II secretion system minor pseudopilin GspK -
  RBI12_RS10450 (RBI12_10485) xcpW 2185534..2186289 (-) 756 WP_017482271.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RBI12_RS10455 (RBI12_10490) xcpV 2186289..2186669 (-) 381 WP_017482272.1 type II secretion system minor pseudopilin GspI Machinery gene
  RBI12_RS10460 (RBI12_10495) - 2186659..2187213 (-) 555 WP_017482273.1 type II secretion system protein -
  RBI12_RS10465 (RBI12_10500) - 2187220..2187828 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  RBI12_RS10470 (RBI12_10505) ycfH 2187865..2188638 (-) 774 WP_017482274.1 TatD family hydrolase -
  RBI12_RS10475 (RBI12_10510) pilZ 2188656..2188997 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  RBI12_RS10480 (RBI12_10515) holB 2189008..2189988 (-) 981 WP_017482275.1 DNA polymerase III subunit delta' -
  RBI12_RS10485 (RBI12_10520) kdsB 2190002..2190763 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=871548 RBI12_RS10455 WP_017482272.1 2186289..2186669(-) (xcpV) [Acinetobacter pittii strain A774]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=871548 RBI12_RS10455 WP_017482272.1 2186289..2186669(-) (xcpV) [Acinetobacter pittii strain A774]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCAACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCAGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937