Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RBI12_RS02225 Genome accession   NZ_CP133054
Coordinates   468935..469564 (-) Length   209 a.a.
NCBI ID   WP_017481676.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 463935..474564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS02190 (RBI12_02195) mlaE 464268..465044 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RBI12_RS02195 (RBI12_02200) - 465044..465724 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RBI12_RS02200 (RBI12_02205) - 465751..466392 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  RBI12_RS02205 (RBI12_02210) - 466404..466691 (+) 288 WP_005078357.1 lipid asymmetry maintenance protein MlaB -
  RBI12_RS02210 (RBI12_02215) - 466764..467777 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  RBI12_RS02215 (RBI12_02220) - 467936..468517 (+) 582 WP_005804599.1 TIGR00730 family Rossman fold protein -
  RBI12_RS02220 (RBI12_02225) mutT 468532..468933 (+) 402 WP_002116701.1 NUDIX domain-containing protein -
  RBI12_RS02225 (RBI12_02230) comF 468935..469564 (-) 630 WP_017481676.1 ComF family protein Machinery gene
  RBI12_RS02230 (RBI12_02235) recG 469557..471602 (-) 2046 WP_017481675.1 ATP-dependent DNA helicase RecG -
  RBI12_RS02235 (RBI12_02240) - 471623..472438 (+) 816 WP_017481674.1 NAD-dependent epimerase/dehydratase family protein -
  RBI12_RS02240 (RBI12_02245) - 472518..473501 (+) 984 WP_025468463.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24456.58 Da        Isoelectric Point: 9.9490

>NTDB_id=871540 RBI12_RS02225 WP_017481676.1 468935..469564(-) (comF) [Acinetobacter pittii strain A774]
MFNFLNFQHLIQLFSPCSLCELGTREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLVLANILSKHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=871540 RBI12_RS02225 WP_017481676.1 468935..469564(-) (comF) [Acinetobacter pittii strain A774]
ATGTTTAATTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCAATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCCTTAGTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.732

100

0.837
  comF Acinetobacter baumannii D1279779

82.775

100

0.828