Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RBI11_RS10330 Genome accession   NZ_CP133052
Coordinates   2159653..2160288 (-) Length   211 a.a.
NCBI ID   WP_057094715.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A1014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2154653..2165288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS10295 (RBI11_10320) mlaE 2154990..2155766 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RBI11_RS10300 (RBI11_10325) - 2155766..2156446 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RBI11_RS10305 (RBI11_10330) - 2156473..2157114 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  RBI11_RS10310 (RBI11_10335) - 2157126..2157413 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  RBI11_RS10315 (RBI11_10340) - 2157482..2158495 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  RBI11_RS10320 (RBI11_10345) - 2158653..2159234 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  RBI11_RS10325 (RBI11_10350) - 2159249..2159650 (+) 402 WP_000849705.1 NUDIX domain-containing protein -
  RBI11_RS10330 (RBI11_10355) comF 2159653..2160288 (-) 636 WP_057094715.1 ComF family protein Machinery gene
  RBI11_RS10335 (RBI11_10360) recG 2160281..2162326 (-) 2046 WP_000204960.1 ATP-dependent DNA helicase RecG -
  RBI11_RS10340 (RBI11_10365) - 2162347..2163162 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  RBI11_RS10345 (RBI11_10370) adeT2 2163242..2164228 (+) 987 WP_057094716.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24600.78 Da        Isoelectric Point: 9.7140

>NTDB_id=871516 RBI11_RS10330 WP_057094715.1 2159653..2160288(-) (comF) [Acinetobacter baumannii strain A1014]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHAICLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=871516 RBI11_RS10330 WP_057094715.1 2159653..2160288(-) (comF) [Acinetobacter baumannii strain A1014]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTCAAACAGCTAGGGTGTACATCTATTCATGCCATTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981