Detailed information NTG0871492

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RBI11_RS06645
• Genome accession: NZ_CP133052
• Coordinates: 1377627..1378487 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain A1014
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1372627..1383487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBI11_RS06625 (RBI11_06645)	secG	1373232..1373561 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RBI11_RS06630 (RBI11_06650)	tpiA	1373574..1374368 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
RBI11_RS06635 (RBI11_06655)	pilB	1374659..1376371 (+)	1713	WP_031959606.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RBI11_RS06640 (RBI11_06660)	pilC	1376401..1377627 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
RBI11_RS06645 (RBI11_06665)	pilD	1377627..1378487 (+)	861	WP_001152273.1	A24 family peptidase	Machinery gene
RBI11_RS06650 (RBI11_06670)	coaE	1378489..1379085 (+)	597	WP_023897382.1	dephospho-CoA kinase	-
RBI11_RS06655 (RBI11_06675)	-	1379082..1379996 (-)	915	WP_000075014.1	DMT family transporter	-
RBI11_RS06660 (RBI11_06680)	rlmB	1380032..1380781 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RBI11_RS06665 (RBI11_06685)	-	1380883..1381209 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RBI11_RS06670 (RBI11_06690)	-	1381286..1382596 (-)	1311	WP_049081383.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=871492 RBI11_RS06645 WP_001152273.1 1377627..1378487(+) (pilD) [Acinetobacter baumannii strain A1014]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=871492 RBI11_RS06645 WP_001152273.1 1377627..1378487(+) (pilD) [Acinetobacter baumannii strain A1014]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441