Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RBI10_RS09685 Genome accession   NZ_CP133047
Coordinates   2038012..2038392 (-) Length   126 a.a.
NCBI ID   WP_032057019.1    Uniprot ID   A0A009RST6
Organism   Acinetobacter pittii strain A1269     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2033012..2043392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS09655 (RBI10_09680) tadA 2033076..2033579 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  RBI10_RS09660 (RBI10_09685) hibch 2033585..2034709 (-) 1125 WP_016803061.1 enoyl-CoA hydratase/isomerase family protein -
  RBI10_RS09665 (RBI10_09690) ung 2034706..2035419 (-) 714 WP_069119298.1 uracil-DNA glycosylase -
  RBI10_RS09670 (RBI10_09695) - 2035473..2036069 (-) 597 WP_002121363.1 6-carboxytetrahydropterin synthase -
  RBI10_RS09675 (RBI10_09700) gspK 2036297..2037256 (-) 960 WP_069119296.1 type II secretion system minor pseudopilin GspK -
  RBI10_RS09680 (RBI10_09705) xcpW 2037257..2038012 (-) 756 WP_032057017.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RBI10_RS09685 (RBI10_09710) xcpV 2038012..2038392 (-) 381 WP_032057019.1 type II secretion system minor pseudopilin GspI Machinery gene
  RBI10_RS09690 (RBI10_09715) - 2038382..2038936 (-) 555 WP_005069534.1 type II secretion system protein -
  RBI10_RS09695 (RBI10_09720) - 2038943..2039551 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  RBI10_RS09700 (RBI10_09725) ycfH 2039588..2040361 (-) 774 WP_017399499.1 TatD family hydrolase -
  RBI10_RS09705 (RBI10_09730) pilZ 2040379..2040720 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  RBI10_RS09710 (RBI10_09735) holB 2040731..2041711 (-) 981 WP_032057020.1 DNA polymerase III subunit delta' -
  RBI10_RS09715 (RBI10_09740) kdsB 2041725..2042486 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13902.03 Da        Isoelectric Point: 9.4463

>NTDB_id=871453 RBI10_RS09685 WP_032057019.1 2038012..2038392(-) (xcpV) [Acinetobacter pittii strain A1269]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDVQVSLYDSDKGKVQNGITHLVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=871453 RBI10_RS09685 WP_032057019.1 2038012..2038392(-) (xcpV) [Acinetobacter pittii strain A1269]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAGTTG
CTTTAATGGAAATAAATCAGGAATGGCTCGAAGGTACACAAAGCAAGCAAGTGACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCTGCGCAATCTACAATTAGTCCAAATGTTCAAAAAGTAGATGTACAAGTTAGTTTATATGATTCTGATAAGGG
GAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTACCCCGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RST6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

95.238

100

0.952