Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SHJJP9002_RS09285 Genome accession   NZ_CP133006
Coordinates   1924119..1924682 (-) Length   187 a.a.
NCBI ID   WP_107550859.1    Uniprot ID   -
Organism   Staphylococcus casei strain SCK7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1919119..1929682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9002_RS09250 (SHJJP9002_001849) - 1919412..1920764 (-) 1353 WP_107550857.1 isochorismate synthase -
  SHJJP9002_RS09255 (SHJJP9002_001850) - 1920945..1921883 (+) 939 WP_069823395.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  SHJJP9002_RS09260 (SHJJP9002_001851) - 1921975..1922541 (-) 567 WP_069823394.1 GNAT family N-acetyltransferase -
  SHJJP9002_RS09265 (SHJJP9002_001852) - 1922708..1922920 (+) 213 WP_046838117.1 NINE protein -
  SHJJP9002_RS09270 (SHJJP9002_001853) - 1923351..1923548 (-) 198 WP_341636458.1 hypothetical protein -
  SHJJP9002_RS09285 (SHJJP9002_001856) comK/comK1 1924119..1924682 (-) 564 WP_107550859.1 competence protein ComK Regulator
  SHJJP9002_RS09290 (SHJJP9002_001857) - 1924936..1925154 (+) 219 WP_046838109.1 IDEAL domain-containing protein -
  SHJJP9002_RS09295 (SHJJP9002_001858) - 1925254..1926243 (-) 990 WP_341636459.1 lipoate--protein ligase -
  SHJJP9002_RS09300 (SHJJP9002_001859) - 1926442..1926627 (+) 186 WP_046838107.1 DUF2187 family protein -
  SHJJP9002_RS09305 (SHJJP9002_001860) - 1926633..1927235 (+) 603 WP_069823390.1 CPBP family glutamic-type intramembrane protease -
  SHJJP9002_RS09310 (SHJJP9002_001861) - 1927397..1928905 (-) 1509 WP_107550860.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22027.30 Da        Isoelectric Point: 9.2547

>NTDB_id=871309 SHJJP9002_RS09285 WP_107550859.1 1924119..1924682(-) (comK/comK1) [Staphylococcus casei strain SCK7]
MIQQYIIKKGDMALQPCNLSIGQYEGTSIYKYKEESNVIKDRIHKIIDRSCRFYGSSYVFKKEDTMRITGICSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQSIRTLKDKKSKVTFVDNQSIIVNISAHSMQHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKSQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=871309 SHJJP9002_RS09285 WP_107550859.1 1924119..1924682(-) (comK/comK1) [Staphylococcus casei strain SCK7]
ATGATTCAACAATACATTATTAAAAAAGGTGATATGGCGCTTCAACCATGTAATTTGTCAATTGGACAGTATGAAGGTAC
ATCTATCTACAAGTACAAAGAAGAAAGTAATGTCATAAAAGATCGAATACATAAAATTATCGACCGTTCATGCAGGTTCT
ACGGTAGTAGTTATGTATTTAAAAAAGAAGATACTATGAGAATCACTGGTATTTGCAGTAAACCACCTATTTTATTCACT
CCGTTATTTCCTACTTATTTCTTTCCAACCCATTCAGACCGTAAAGAAGAAAATACTTGGATCAACATTCATTATGTTCA
GAGTATTAGAACGTTAAAAGATAAAAAATCTAAAGTGACTTTCGTAGATAATCAATCTATTATTGTTAATATTTCAGCAC
ATAGTATGCAACATCAATACTTAAACGGTATATACTATTATTATATGATGGATAGAGCAGCTAGAGTTGCTACATTTGAT
CCCGAATCTCCTATTGATTATACGAAATCACAATTAAATATTTACGAAGCTTTGGCCAAATACTCTTTATTTGAAAGTAA
GTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

54.098

97.861

0.529
  comK/comK1 Staphylococcus aureus N315

54.098

97.861

0.529