Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | SHJJP9002_RS06325 | Genome accession | NZ_CP133006 |
| Coordinates | 1322436..1323410 (+) | Length | 324 a.a. |
| NCBI ID | WP_107550724.1 | Uniprot ID | - |
| Organism | Staphylococcus casei strain SCK7 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1317436..1328410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SHJJP9002_RS06295 (SHJJP9002_001257) | - | 1317979..1318179 (+) | 201 | WP_069824404.1 | YqgQ family protein | - |
| SHJJP9002_RS06300 (SHJJP9002_001258) | - | 1318416..1318859 (+) | 444 | WP_069823956.1 | MarR family transcriptional regulator | - |
| SHJJP9002_RS06305 (SHJJP9002_001259) | - | 1318852..1319676 (+) | 825 | WP_069823957.1 | N-acyl homoserine lactonase family protein | - |
| SHJJP9002_RS06310 (SHJJP9002_001260) | - | 1320380..1321366 (+) | 987 | WP_341636959.1 | glucokinase | - |
| SHJJP9002_RS06315 (SHJJP9002_001261) | - | 1321366..1321689 (+) | 324 | WP_069823959.1 | MTH1187 family thiamine-binding protein | - |
| SHJJP9002_RS06320 (SHJJP9002_001262) | - | 1321691..1322314 (+) | 624 | WP_069823960.1 | MBL fold metallo-hydrolase | - |
| SHJJP9002_RS06325 (SHJJP9002_001263) | comGA | 1322436..1323410 (+) | 975 | WP_107550724.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SHJJP9002_RS06330 (SHJJP9002_001264) | comGB | 1323382..1324449 (+) | 1068 | WP_069823962.1 | competence type IV pilus assembly protein ComGB | - |
| SHJJP9002_RS06335 (SHJJP9002_001265) | comGC | 1324473..1324790 (+) | 318 | WP_069823963.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SHJJP9002_RS06340 (SHJJP9002_001266) | comGD | 1324771..1325214 (+) | 444 | WP_341636975.1 | competence type IV pilus minor pilin ComGD | - |
| SHJJP9002_RS06345 (SHJJP9002_001267) | - | 1325201..1325500 (+) | 300 | WP_069823965.1 | hypothetical protein | - |
| SHJJP9002_RS06350 (SHJJP9002_001268) | - | 1325472..1325915 (+) | 444 | WP_069823966.1 | ComGF family competence protein | - |
| SHJJP9002_RS06355 (SHJJP9002_001269) | - | 1326080..1326595 (+) | 516 | WP_069823968.1 | shikimate kinase | - |
| SHJJP9002_RS06360 (SHJJP9002_001270) | gcvT | 1326777..1327868 (+) | 1092 | WP_069823969.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37205.02 Da Isoelectric Point: 8.9277
>NTDB_id=871302 SHJJP9002_RS06325 WP_107550724.1 1322436..1323410(+) (comGA) [Staphylococcus casei strain SCK7]
MKLLFKNVINKAIDSETTDVHFIPSEQEVYIKFRIQDSLILQDTIQLELYRKLLTYMKYQAGLDVSNHNTAQSGRYIYKM
KQLFYLRISTLPLSLGNESCVIRIIPQYFQKQSHGSGIKSLYSLMNKKQGLILFSGPTGSGKSTLMYHMVMYAKEQLDLN
IITVEDPVEQLIKGVTQVSINEKAGINYETSFKAILRCDPDVILIGEIRDASIAKYVIQASLSGHLVLSTIHANDCKGAL
LRLREMNISVQEICQSIKSIINQRLVTTSQHNRKLIYEQLNQQDINYFFDNNHSLPKHFNNLSYYLNRMSRAGVICEETV
DRYI
MKLLFKNVINKAIDSETTDVHFIPSEQEVYIKFRIQDSLILQDTIQLELYRKLLTYMKYQAGLDVSNHNTAQSGRYIYKM
KQLFYLRISTLPLSLGNESCVIRIIPQYFQKQSHGSGIKSLYSLMNKKQGLILFSGPTGSGKSTLMYHMVMYAKEQLDLN
IITVEDPVEQLIKGVTQVSINEKAGINYETSFKAILRCDPDVILIGEIRDASIAKYVIQASLSGHLVLSTIHANDCKGAL
LRLREMNISVQEICQSIKSIINQRLVTTSQHNRKLIYEQLNQQDINYFFDNNHSLPKHFNNLSYYLNRMSRAGVICEETV
DRYI
Nucleotide
Download Length: 975 bp
>NTDB_id=871302 SHJJP9002_RS06325 WP_107550724.1 1322436..1323410(+) (comGA) [Staphylococcus casei strain SCK7]
TTGAAACTATTGTTTAAAAACGTAATTAATAAAGCAATAGATAGCGAGACGACTGATGTTCATTTCATTCCTTCCGAACA
GGAGGTCTATATCAAGTTTAGAATACAAGACAGTTTAATATTACAGGACACAATTCAGCTAGAACTTTATAGAAAGTTAC
TCACTTACATGAAATATCAAGCTGGCTTAGATGTTTCCAATCATAATACAGCACAAAGTGGAAGATACATCTACAAAATG
AAACAATTATTTTACTTAAGAATCTCAACATTACCTTTGTCTTTAGGAAATGAAAGCTGTGTAATTAGAATCATCCCTCA
ATATTTTCAAAAGCAAAGTCACGGTAGTGGTATTAAAAGTTTATATAGTTTAATGAACAAGAAACAAGGACTTATTTTAT
TTAGTGGTCCTACTGGATCGGGAAAAAGTACGTTAATGTATCACATGGTAATGTACGCAAAAGAACAATTAGACTTAAAT
ATCATCACGGTGGAAGACCCGGTAGAACAGTTGATCAAAGGTGTGACACAAGTTTCAATAAATGAAAAGGCAGGTATTAA
TTATGAAACGTCTTTTAAAGCGATATTAAGGTGTGATCCAGATGTGATTCTTATTGGTGAGATAAGAGATGCTTCCATAG
CGAAATATGTTATTCAAGCGAGTTTAAGCGGACATTTAGTACTATCCACAATTCATGCTAATGACTGTAAAGGCGCCTTA
TTAAGGTTAAGAGAAATGAATATCAGTGTTCAGGAAATCTGCCAATCTATAAAAAGCATCATTAACCAAAGACTGGTTAC
CACATCGCAACATAATAGAAAGTTAATATATGAGCAGCTAAACCAACAAGATATTAATTATTTTTTTGACAACAATCACT
CATTACCTAAACATTTCAATAACTTATCTTATTACTTAAACAGAATGTCGAGAGCGGGTGTTATTTGTGAAGAGACCGTG
GATCGATATATTTAA
TTGAAACTATTGTTTAAAAACGTAATTAATAAAGCAATAGATAGCGAGACGACTGATGTTCATTTCATTCCTTCCGAACA
GGAGGTCTATATCAAGTTTAGAATACAAGACAGTTTAATATTACAGGACACAATTCAGCTAGAACTTTATAGAAAGTTAC
TCACTTACATGAAATATCAAGCTGGCTTAGATGTTTCCAATCATAATACAGCACAAAGTGGAAGATACATCTACAAAATG
AAACAATTATTTTACTTAAGAATCTCAACATTACCTTTGTCTTTAGGAAATGAAAGCTGTGTAATTAGAATCATCCCTCA
ATATTTTCAAAAGCAAAGTCACGGTAGTGGTATTAAAAGTTTATATAGTTTAATGAACAAGAAACAAGGACTTATTTTAT
TTAGTGGTCCTACTGGATCGGGAAAAAGTACGTTAATGTATCACATGGTAATGTACGCAAAAGAACAATTAGACTTAAAT
ATCATCACGGTGGAAGACCCGGTAGAACAGTTGATCAAAGGTGTGACACAAGTTTCAATAAATGAAAAGGCAGGTATTAA
TTATGAAACGTCTTTTAAAGCGATATTAAGGTGTGATCCAGATGTGATTCTTATTGGTGAGATAAGAGATGCTTCCATAG
CGAAATATGTTATTCAAGCGAGTTTAAGCGGACATTTAGTACTATCCACAATTCATGCTAATGACTGTAAAGGCGCCTTA
TTAAGGTTAAGAGAAATGAATATCAGTGTTCAGGAAATCTGCCAATCTATAAAAAGCATCATTAACCAAAGACTGGTTAC
CACATCGCAACATAATAGAAAGTTAATATATGAGCAGCTAAACCAACAAGATATTAATTATTTTTTTGACAACAATCACT
CATTACCTAAACATTTCAATAACTTATCTTATTACTTAAACAGAATGTCGAGAGCGGGTGTTATTTGTGAAGAGACCGTG
GATCGATATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
63.58 |
100 |
0.636 |
| comGA | Staphylococcus aureus N315 |
63.58 |
100 |
0.636 |