Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | SHJJP9002_RS06335 | Genome accession | NZ_CP133006 |
| Coordinates | 1324473..1324790 (+) | Length | 105 a.a. |
| NCBI ID | WP_069823963.1 | Uniprot ID | - |
| Organism | Staphylococcus casei strain SCK7 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1319473..1329790
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SHJJP9002_RS06310 (SHJJP9002_001260) | - | 1320380..1321366 (+) | 987 | WP_341636959.1 | glucokinase | - |
| SHJJP9002_RS06315 (SHJJP9002_001261) | - | 1321366..1321689 (+) | 324 | WP_069823959.1 | MTH1187 family thiamine-binding protein | - |
| SHJJP9002_RS06320 (SHJJP9002_001262) | - | 1321691..1322314 (+) | 624 | WP_069823960.1 | MBL fold metallo-hydrolase | - |
| SHJJP9002_RS06325 (SHJJP9002_001263) | comGA | 1322436..1323410 (+) | 975 | WP_107550724.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SHJJP9002_RS06330 (SHJJP9002_001264) | comGB | 1323382..1324449 (+) | 1068 | WP_069823962.1 | competence type IV pilus assembly protein ComGB | - |
| SHJJP9002_RS06335 (SHJJP9002_001265) | comGC | 1324473..1324790 (+) | 318 | WP_069823963.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SHJJP9002_RS06340 (SHJJP9002_001266) | comGD | 1324771..1325214 (+) | 444 | WP_341636975.1 | competence type IV pilus minor pilin ComGD | - |
| SHJJP9002_RS06345 (SHJJP9002_001267) | - | 1325201..1325500 (+) | 300 | WP_069823965.1 | hypothetical protein | - |
| SHJJP9002_RS06350 (SHJJP9002_001268) | - | 1325472..1325915 (+) | 444 | WP_069823966.1 | ComGF family competence protein | - |
| SHJJP9002_RS06355 (SHJJP9002_001269) | - | 1326080..1326595 (+) | 516 | WP_069823968.1 | shikimate kinase | - |
| SHJJP9002_RS06360 (SHJJP9002_001270) | gcvT | 1326777..1327868 (+) | 1092 | WP_069823969.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| SHJJP9002_RS06365 (SHJJP9002_001271) | gcvPA | 1327886..1329238 (+) | 1353 | WP_069823970.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11785.04 Da Isoelectric Point: 9.0956
>NTDB_id=871303 SHJJP9002_RS06335 WP_069823963.1 1324473..1324790(+) (comGC) [Staphylococcus casei strain SCK7]
MKKQFKIFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSKHIQATGCEAQLKMIDSQIEAYTLKFNKKPTSIDDLVTEG
YIKENQKQCKSGAMITISNGEAIAN
MKKQFKIFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSKHIQATGCEAQLKMIDSQIEAYTLKFNKKPTSIDDLVTEG
YIKENQKQCKSGAMITISNGEAIAN
Nucleotide
Download Length: 318 bp
>NTDB_id=871303 SHJJP9002_RS06335 WP_069823963.1 1324473..1324790(+) (comGC) [Staphylococcus casei strain SCK7]
ATGAAAAAACAATTTAAAATTTTTAACAAAGAGGCTTTTACATTAATTGAAATGTTGCTAGTACTACTCATTATTAGTTT
ATTATTAATTTTAATTATTCCAAATATTGCAAAACAATCTAAACATATACAAGCTACAGGTTGTGAAGCGCAACTTAAAA
TGATAGACAGCCAAATAGAAGCTTATACATTAAAATTCAATAAAAAACCTACATCTATAGACGATTTGGTCACTGAAGGT
TACATAAAAGAAAATCAGAAACAATGTAAGTCAGGTGCTATGATAACAATTAGTAATGGTGAAGCTATTGCGAACTAG
ATGAAAAAACAATTTAAAATTTTTAACAAAGAGGCTTTTACATTAATTGAAATGTTGCTAGTACTACTCATTATTAGTTT
ATTATTAATTTTAATTATTCCAAATATTGCAAAACAATCTAAACATATACAAGCTACAGGTTGTGAAGCGCAACTTAAAA
TGATAGACAGCCAAATAGAAGCTTATACATTAAAATTCAATAAAAAACCTACATCTATAGACGATTTGGTCACTGAAGGT
TACATAAAAGAAAATCAGAAACAATGTAAGTCAGGTGCTATGATAACAATTAGTAATGGTGAAGCTATTGCGAACTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
73.529 |
97.143 |
0.714 |
| comGC | Staphylococcus aureus N315 |
73.529 |
97.143 |
0.714 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
42.553 |
89.524 |
0.381 |
| comYC | Streptococcus mutans UA140 |
45.238 |
80 |
0.362 |
| comYC | Streptococcus mutans UA159 |
45.238 |
80 |
0.362 |