Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SHJJP9002_RS03865 Genome accession   NZ_CP133006
Coordinates   846013..846432 (+) Length   139 a.a.
NCBI ID   WP_069823677.1    Uniprot ID   -
Organism   Staphylococcus casei strain SCK7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 841013..851432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9002_RS03835 (SHJJP9002_000766) atpD 841161..842573 (+) 1413 WP_046837799.1 F0F1 ATP synthase subunit beta -
  SHJJP9002_RS03840 (SHJJP9002_000767) - 842593..842997 (+) 405 WP_069823672.1 F0F1 ATP synthase subunit epsilon -
  SHJJP9002_RS03845 (SHJJP9002_000768) - 843226..843459 (+) 234 WP_069823673.1 DUF1146 family protein -
  SHJJP9002_RS03850 (SHJJP9002_000769) murA 843561..844826 (+) 1266 WP_069823674.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SHJJP9002_RS03855 (SHJJP9002_000770) fabZ 844884..845321 (+) 438 WP_069823675.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SHJJP9002_RS03860 (SHJJP9002_000771) - 845380..845823 (-) 444 WP_069823676.1 YwpF-like family protein -
  SHJJP9002_RS03865 (SHJJP9002_000772) ssb 846013..846432 (+) 420 WP_069823677.1 single-stranded DNA-binding protein Machinery gene
  SHJJP9002_RS03870 (SHJJP9002_000773) - 846910..847578 (+) 669 WP_069823753.1 transglycosylase family protein -
  SHJJP9002_RS03875 (SHJJP9002_000774) tenA 847901..848590 (+) 690 WP_069822721.1 thiaminase II -
  SHJJP9002_RS03880 (SHJJP9002_000775) thiD 848583..849404 (+) 822 WP_341636852.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SHJJP9002_RS03885 (SHJJP9002_000776) thiM 849394..850185 (+) 792 WP_069822719.1 hydroxyethylthiazole kinase -
  SHJJP9002_RS03890 (SHJJP9002_000777) thiE 850189..850827 (+) 639 WP_069822718.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15969.24 Da        Isoelectric Point: 6.7073

>NTDB_id=871290 SHJJP9002_RS03865 WP_069823677.1 846013..846432(+) (ssb) [Staphylococcus casei strain SCK7]
MINNIVVVGRLTKAPKIFEKEGSKLATFCVAVTRNYKDKHQNTICDYLYCKAFGKIASNIEKYINQGSLVGITGQMQSRK
FTKEGQTHFVSEIYIETIKFMSPQSKVETETVFEPFQLERNHESLDEITVQETDIYETV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=871290 SHJJP9002_RS03865 WP_069823677.1 846013..846432(+) (ssb) [Staphylococcus casei strain SCK7]
ATGATCAATAATATCGTCGTTGTAGGACGACTTACAAAAGCTCCAAAAATATTTGAAAAGGAGGGCAGTAAATTAGCTAC
ATTTTGTGTAGCAGTTACTAGAAACTATAAAGATAAGCATCAAAATACAATTTGTGACTATTTATACTGTAAAGCATTTG
GAAAGATAGCCAGTAATATTGAAAAATATATTAATCAAGGTTCACTGGTAGGTATTACAGGACAAATGCAATCACGTAAA
TTTACAAAAGAAGGACAGACGCACTTTGTATCAGAAATTTATATTGAAACCATCAAATTTATGTCTCCACAATCAAAAGT
TGAAACAGAAACGGTATTTGAGCCATTCCAACTAGAACGCAACCATGAGTCATTAGATGAAATAACTGTACAAGAAACCG
ATATATATGAAACTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

71.698

76.259

0.547
  ssb Staphylococcus aureus MW2

70.755

76.259

0.54