Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SHJJP9001_RS07490 Genome accession   NZ_CP132999
Coordinates   1608705..1609577 (-) Length   290 a.a.
NCBI ID   WP_002484839.1    Uniprot ID   A0A4Y7VXK4
Organism   Staphylococcus epidermidis strain SEA37     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1570245..1641057 1608705..1609577 within 0


Gene organization within MGE regions


Location: 1570245..1641057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9001_RS07345 (SHJJP9001_001466) - 1571285..1572556 (-) 1272 WP_002439538.1 pitrilysin family protein -
  SHJJP9001_RS07350 (SHJJP9001_001467) - 1572587..1573300 (-) 714 WP_002439536.1 GntR family transcriptional regulator -
  SHJJP9001_RS07355 (SHJJP9001_001468) - 1573303..1575696 (-) 2394 WP_002439534.1 DNA translocase FtsK -
  SHJJP9001_RS07360 (SHJJP9001_001469) - 1575962..1577635 (-) 1674 WP_002457357.1 ribonuclease J -
  SHJJP9001_RS07365 (SHJJP9001_001470) pnp 1578003..1580108 (-) 2106 WP_001832554.1 polyribonucleotide nucleotidyltransferase -
  SHJJP9001_RS07370 (SHJJP9001_001471) rpsO 1580240..1580509 (-) 270 WP_002439528.1 30S ribosomal protein S15 -
  SHJJP9001_RS07375 (SHJJP9001_001472) - 1580629..1581600 (-) 972 WP_001832563.1 bifunctional riboflavin kinase/FAD synthetase -
  SHJJP9001_RS07380 (SHJJP9001_001473) truB 1581616..1582533 (-) 918 WP_002456563.1 tRNA pseudouridine(55) synthase TruB -
  SHJJP9001_RS07385 (SHJJP9001_001474) rbfA 1582671..1583021 (-) 351 WP_001829509.1 30S ribosome-binding factor RbfA -
  SHJJP9001_RS07390 (SHJJP9001_001475) infB 1583324..1585486 (-) 2163 WP_002468903.1 translation initiation factor IF-2 -
  SHJJP9001_RS07395 (SHJJP9001_001476) - 1585491..1585808 (-) 318 WP_002439520.1 YlxQ family RNA-binding protein -
  SHJJP9001_RS07400 (SHJJP9001_001477) - 1585808..1586092 (-) 285 WP_001829465.1 YlxR family protein -
  SHJJP9001_RS07405 (SHJJP9001_001478) nusA 1586110..1587333 (-) 1224 WP_020368160.1 transcription termination factor NusA -
  SHJJP9001_RS07410 (SHJJP9001_001479) rimP 1587354..1587821 (-) 468 WP_002439519.1 ribosome maturation factor RimP -
  SHJJP9001_RS07415 (SHJJP9001_001480) - 1588000..1592310 (-) 4311 WP_002456566.1 PolC-type DNA polymerase III -
  SHJJP9001_RS07420 (SHJJP9001_001481) - 1592560..1594263 (-) 1704 WP_001829513.1 proline--tRNA ligase -
  SHJJP9001_RS07425 (SHJJP9001_001482) rseP 1594282..1595568 (-) 1287 WP_001829501.1 RIP metalloprotease RseP -
  SHJJP9001_RS07430 (SHJJP9001_001483) - 1595802..1596584 (-) 783 WP_001829499.1 phosphatidate cytidylyltransferase -
  SHJJP9001_RS07435 (SHJJP9001_001484) - 1596588..1597358 (-) 771 WP_001832561.1 isoprenyl transferase -
  SHJJP9001_RS07440 (SHJJP9001_001485) frr 1597579..1598133 (-) 555 WP_001829472.1 ribosome recycling factor -
  SHJJP9001_RS07445 (SHJJP9001_001486) pyrH 1598150..1598872 (-) 723 WP_002439511.1 UMP kinase -
  SHJJP9001_RS07450 (SHJJP9001_001487) tsf 1599013..1599891 (-) 879 WP_002439509.1 translation elongation factor Ts -
  SHJJP9001_RS07455 (SHJJP9001_001488) rpsB 1600043..1600831 (-) 789 WP_001832557.1 30S ribosomal protein S2 -
  SHJJP9001_RS07460 (SHJJP9001_001489) codY 1601194..1601964 (-) 771 WP_002439506.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  SHJJP9001_RS07465 (SHJJP9001_001490) hslU 1601988..1603391 (-) 1404 WP_001829474.1 ATP-dependent protease ATPase subunit HslU -
  SHJJP9001_RS07470 (SHJJP9001_001491) hslV 1603460..1604002 (-) 543 WP_001829498.1 ATP-dependent protease subunit HslV -
  SHJJP9001_RS07475 (SHJJP9001_001492) xerC 1604006..1604896 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  SHJJP9001_RS07480 (SHJJP9001_001493) trmFO 1605121..1606428 (-) 1308 WP_001832560.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SHJJP9001_RS07485 (SHJJP9001_001494) topA 1606453..1608522 (-) 2070 WP_001829508.1 type I DNA topoisomerase -
  SHJJP9001_RS07490 (SHJJP9001_001495) dprA 1608705..1609577 (-) 873 WP_002484839.1 DNA-processing protein DprA Machinery gene
  SHJJP9001_RS07495 (SHJJP9001_001496) - 1609917..1610132 (-) 216 Protein_1440 transposase -
  SHJJP9001_RS07500 (SHJJP9001_001497) sucD 1610382..1611290 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  SHJJP9001_RS07505 (SHJJP9001_001498) sucC 1611312..1612478 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  SHJJP9001_RS07510 (SHJJP9001_001499) - 1612586..1613356 (-) 771 WP_001829514.1 ribonuclease HII -
  SHJJP9001_RS07515 (SHJJP9001_001500) ylqF 1613361..1614224 (-) 864 WP_002468554.1 ribosome biogenesis GTPase YlqF -
  SHJJP9001_RS07520 - 1614245..1614394 (-) 150 WP_162152279.1 hypothetical protein -
  SHJJP9001_RS07525 (SHJJP9001_001501) - 1614553..1617153 (+) 2601 WP_010959172.1 YfhO family protein -
  SHJJP9001_RS07530 (SHJJP9001_001502) - 1617146..1619749 (+) 2604 WP_020368058.1 YfhO family protein -
  SHJJP9001_RS07535 (SHJJP9001_001503) rplS 1620279..1620629 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  SHJJP9001_RS07540 (SHJJP9001_001504) trmD 1620735..1621472 (-) 738 WP_001829466.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SHJJP9001_RS07545 (SHJJP9001_001505) rimM 1621472..1621975 (-) 504 WP_001832559.1 ribosome maturation factor RimM -
  SHJJP9001_RS07550 (SHJJP9001_001506) rpsP 1622102..1622377 (-) 276 WP_002439483.1 30S ribosomal protein S16 -
  SHJJP9001_RS07555 (SHJJP9001_001507) ffh 1622623..1623990 (-) 1368 WP_001830113.1 signal recognition particle protein -
  SHJJP9001_RS07560 (SHJJP9001_001508) - 1624021..1624353 (-) 333 WP_002457379.1 putative DNA-binding protein -
  SHJJP9001_RS07565 (SHJJP9001_001509) ftsY 1624355..1625581 (-) 1227 WP_001830080.1 signal recognition particle-docking protein FtsY -
  SHJJP9001_RS07570 (SHJJP9001_001510) smc 1625578..1629147 (-) 3570 WP_002502436.1 chromosome segregation protein SMC -
  SHJJP9001_RS07575 (SHJJP9001_001511) rnc 1629274..1630011 (-) 738 WP_002470220.1 ribonuclease III -
  SHJJP9001_RS07580 (SHJJP9001_001512) - 1630126..1630359 (-) 234 WP_001830184.1 acyl carrier protein -
  SHJJP9001_RS07585 (SHJJP9001_001513) fabG 1630586..1631320 (-) 735 WP_001830161.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  SHJJP9001_RS07590 (SHJJP9001_001514) fabD 1631313..1632239 (-) 927 WP_001830062.1 ACP S-malonyltransferase -
  SHJJP9001_RS07595 (SHJJP9001_001515) plsX 1632241..1633218 (-) 978 WP_001830112.1 phosphate acyltransferase PlsX -
  SHJJP9001_RS07600 (SHJJP9001_001516) fapR 1633220..1633780 (-) 561 WP_001830099.1 transcription factor FapR -
  SHJJP9001_RS07605 (SHJJP9001_001517) recG 1633939..1635987 (-) 2049 WP_020368084.1 ATP-dependent DNA helicase RecG -
  SHJJP9001_RS07610 (SHJJP9001_001518) fakA 1636191..1637849 (-) 1659 WP_002489351.1 fatty acid kinase catalytic subunit FakA -
  SHJJP9001_RS07615 (SHJJP9001_001519) - 1637864..1638238 (-) 375 WP_001830156.1 Asp23/Gls24 family envelope stress response protein -
  SHJJP9001_RS07620 (SHJJP9001_001520) rpmB 1638596..1638784 (+) 189 WP_001830107.1 50S ribosomal protein L28 -
  SHJJP9001_RS07625 (SHJJP9001_001521) - 1638867..1639502 (-) 636 WP_002489340.1 thiamine diphosphokinase -
  SHJJP9001_RS07630 (SHJJP9001_001522) rpe 1639507..1640151 (-) 645 WP_161387401.1 ribulose-phosphate 3-epimerase -
  SHJJP9001_RS07635 (SHJJP9001_001523) rsgA 1640152..1641027 (-) 876 WP_002456227.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33717.61 Da        Isoelectric Point: 9.3616

>NTDB_id=871276 SHJJP9001_RS07490 WP_002484839.1 1608705..1609577(-) (dprA) [Staphylococcus epidermidis strain SEA37]
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=871276 SHJJP9001_RS07490 WP_002484839.1 1608705..1609577(-) (dprA) [Staphylococcus epidermidis strain SEA37]
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y7VXK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566
  dprA Staphylococcus aureus N315

56.944

99.31

0.566