Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   SHJJP9001_RS01330 Genome accession   NZ_CP132999
Coordinates   326694..327590 (+) Length   298 a.a.
NCBI ID   WP_161387427.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SEA37     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 321694..332590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9001_RS01310 (SHJJP9001_000262) - 322379..323923 (+) 1545 WP_010959313.1 NAD(P)H-binding protein -
  SHJJP9001_RS01315 (SHJJP9001_000263) - 324046..325515 (-) 1470 WP_002437984.1 alkaline phosphatase -
  SHJJP9001_RS01320 (SHJJP9001_000264) - 325813..325992 (+) 180 WP_001830653.1 hypothetical protein -
  SHJJP9001_RS01325 (SHJJP9001_000265) braR 326023..326688 (+) 666 WP_001830679.1 response regulator transcription factor Regulator
  SHJJP9001_RS01330 (SHJJP9001_000266) braS 326694..327590 (+) 897 WP_161387427.1 sensor histidine kinase Regulator
  SHJJP9001_RS01335 (SHJJP9001_000267) - 327701..328450 (+) 750 WP_001830627.1 ABC transporter ATP-binding protein -
  SHJJP9001_RS01340 (SHJJP9001_000268) - 328452..330464 (+) 2013 WP_001830646.1 ABC transporter permease -
  SHJJP9001_RS01345 (SHJJP9001_000269) - 330568..331158 (+) 591 WP_001830621.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34882.61 Da        Isoelectric Point: 7.6076

>NTDB_id=871253 SHJJP9001_RS01330 WP_161387427.1 326694..327590(+) (braS) [Staphylococcus epidermidis strain SEA37]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLLLKYRIQFIEQKTQIHYKKSEDIILTDAKWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNHGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=871253 SHJJP9001_RS01330 WP_161387427.1 326694..327590(+) (braS) [Staphylococcus epidermidis strain SEA37]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTGTTTTCTTTACCTTTTGATGCATACGTACTTGCAATCAGTATAATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAACGAACATCTTAAAGATAAAGTAGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGTCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGCTTTTAAAATATAGAATTCAGTTTATTGAGCAAAAGACGCAAATCCATTATAAAAAAAGTGAGGACAT
TATTTTAACCGATGCAAAATGGGCGTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATTTGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAATTGAATCATGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(196-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

59.661

98.993

0.591