Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   WHU26_RS23585 Genome accession   NZ_CP148391
Coordinates   4844016..4844531 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain Z1323HEC0010     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4839016..4849531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU26_RS23540 (WHU26_23535) csrA 4839603..4839788 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  WHU26_RS23570 (WHU26_23565) yqaB 4841246..4841812 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  WHU26_RS23575 (WHU26_23570) yqaA 4841809..4842237 (+) 429 WP_001287457.1 YqaA family protein -
  WHU26_RS23580 (WHU26_23575) gshA 4842310..4843866 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  WHU26_RS23585 (WHU26_23580) luxS 4844016..4844531 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  WHU26_RS23590 (WHU26_23585) emrB 4844595..4846133 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  WHU26_RS23595 (WHU26_23590) emrA 4846150..4847322 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  WHU26_RS23600 (WHU26_23595) emrR 4847449..4847979 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  WHU26_RS23605 (WHU26_23600) ygaH 4848070..4848405 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  WHU26_RS23610 (WHU26_23605) ygaZ 4848395..4849132 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=871252 WHU26_RS23585 WP_001130210.1 4844016..4844531(+) (luxS) [Escherichia coli strain Z1323HEC0010]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=871252 WHU26_RS23585 WP_001130210.1 4844016..4844531(+) (luxS) [Escherichia coli strain Z1323HEC0010]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737