Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   SHJJP9001_RS00165 Genome accession   NZ_CP132999
Coordinates   41104..42732 (-) Length   542 a.a.
NCBI ID   WP_002495147.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SEA37     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 41104..50954 41104..42732 within 0


Gene organization within MGE regions


Location: 41104..50954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9001_RS00165 (SHJJP9001_000033) ccrB 41104..42732 (-) 1629 WP_002495147.1 recombinase family protein Machinery gene
  SHJJP9001_RS00170 (SHJJP9001_000034) ccrA 42754..44103 (-) 1350 WP_020368079.1 recombinase family protein Machinery gene
  SHJJP9001_RS00175 (SHJJP9001_000035) - 44337..46130 (-) 1794 WP_020368078.1 DUF927 domain-containing protein -
  SHJJP9001_RS00180 (SHJJP9001_000036) - 46130..46426 (-) 297 WP_000221967.1 single-stranded DNA-binding protein -
  SHJJP9001_RS00185 (SHJJP9001_000037) - 46598..48181 (+) 1584 WP_001551935.1 hypothetical protein -
  SHJJP9001_RS00190 (SHJJP9001_000038) - 48253..49185 (+) 933 WP_000364405.1 hypothetical protein -
  SHJJP9001_RS00195 (SHJJP9001_000039) - 49611..49988 (+) 378 WP_000687965.1 hypothetical protein -
  SHJJP9001_RS00200 (SHJJP9001_000040) - 50457..50954 (+) 498 WP_000051479.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62627.84 Da        Isoelectric Point: 9.9763

>NTDB_id=871250 SHJJP9001_RS00165 WP_002495147.1 41104..42732(-) (ccrB) [Staphylococcus epidermidis strain SEA37]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPDLQRMLKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIRCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQQVVARVNQENQVDGASLHHDIAYKQQQYD
EVKIKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFNAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVIDRIDIKKDGNHKKHFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=871250 SHJJP9001_RS00165 WP_002495147.1 41104..42732(-) (ccrB) [Staphylococcus epidermidis strain SEA37]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAGGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGATCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATCGACTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCGGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTTAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAGATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGTAAC
TTGCCCCTAGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTGAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTGCAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTTCATGGTAAAGGAACGA
ATCTGCTTACAGGCATTATTCGCTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACTCTTAAAGAC
GGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTAATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTCAACAGGTTG
TAGCACGTGTTAATCAAGAAAATCAAGTTGATGGCGCGTCACTTCATCACGATATCGCTTATAAGCAACAACAATATGAT
GAAGTAAAAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGACTT
TATTTAATGCCAAAGAAATTAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACATTTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTGTTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

97.786

100

0.978