Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | RBH03_RS24035 | Genome accession | NZ_CP132995 |
| Coordinates | 5174786..5175658 (-) | Length | 290 a.a. |
| NCBI ID | WP_023084740.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain ZYPA192 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5169786..5180658
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RBH03_RS23990 (RBH03_23995) | - | 5170647..5170817 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| RBH03_RS23995 (RBH03_24000) | - | 5170843..5171292 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| RBH03_RS24000 (RBH03_24005) | - | 5171289..5171918 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| RBH03_RS24005 (RBH03_24010) | - | 5172051..5172476 (+) | 426 | WP_009875877.1 | GNAT family N-acetyltransferase | - |
| RBH03_RS24010 (RBH03_24015) | - | 5172473..5172943 (+) | 471 | WP_003094664.1 | hypothetical protein | - |
| RBH03_RS24015 (RBH03_24020) | - | 5172940..5173629 (+) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| RBH03_RS24020 (RBH03_24025) | - | 5173735..5173944 (+) | 210 | WP_003120946.1 | hypothetical protein | - |
| RBH03_RS24025 (RBH03_24030) | yacG | 5173981..5174181 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| RBH03_RS24030 (RBH03_24035) | coaE | 5174178..5174789 (-) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| RBH03_RS24035 (RBH03_24040) | pilD | 5174786..5175658 (-) | 873 | WP_023084740.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| RBH03_RS24040 (RBH03_24045) | pilC | 5175659..5176876 (-) | 1218 | WP_003107299.1 | type II secretion system F family protein | Machinery gene |
| RBH03_RS24045 (RBH03_24050) | pilB | 5176880..5177974 (-) | 1095 | Protein_4750 | type IV-A pilus assembly ATPase PilB | - |
| RBH03_RS24050 (RBH03_24055) | - | 5178043..5179235 (+) | 1193 | WP_257713843.1 | IS3-like element ISPpu29 family transposase | - |
| RBH03_RS24055 (RBH03_24060) | - | 5179388..5180005 (-) | 618 | Protein_4752 | type IV-A pilus assembly ATPase PilB | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31843.88 Da Isoelectric Point: 7.7068
>NTDB_id=871210 RBH03_RS24035 WP_023084740.1 5174786..5175658(-) (pilD) [Pseudomonas aeruginosa strain ZYPA192]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=871210 RBH03_RS24035 WP_023084740.1 5174786..5175658(-) (pilD) [Pseudomonas aeruginosa strain ZYPA192]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |