Detailed information NTG0871106

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RBH05_RS12560
• Genome accession: NZ_CP132987
• Coordinates: 2595953..2596753 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain KPLSX
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2590953..2601753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBH05_RS12525 (RBH05_12525)	gspH	2591109..2591618 (+)	510	WP_064153121.1	type II secretion system minor pseudopilin GspH	-
RBH05_RS12530 (RBH05_12530)	gspI	2591621..2591986 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RBH05_RS12535 (RBH05_12535)	gspJ	2591983..2592579 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
RBH05_RS12540 (RBH05_12540)	gspK	2592576..2593562 (+)	987	WP_102007297.1	type II secretion system minor pseudopilin GspK	-
RBH05_RS12545 (RBH05_12545)	gspL	2593549..2594742 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
RBH05_RS12550 (RBH05_12550)	-	2594735..2595220 (+)	486	WP_004151943.1	type II secretion system protein M	-
RBH05_RS12555 (RBH05_12555)	-	2595210..2595956 (+)	747	WP_004145897.1	type II secretion system protein N	-
RBH05_RS12560 (RBH05_12560)	pilD	2595953..2596753 (+)	801	WP_004213441.1	A24 family peptidase	Machinery gene
RBH05_RS12565 (RBH05_12565)	hrpB	2596801..2599230 (-)	2430	WP_064153122.1	ATP-dependent helicase HrpB	-
RBH05_RS12570 (RBH05_12570)	thpR	2599303..2599839 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
RBH05_RS12575 (RBH05_12575)	sfsA	2599839..2600555 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RBH05_RS12580 (RBH05_12580)	dksA	2600718..2601173 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=871106 RBH05_RS12560 WP_004213441.1 2595953..2596753(+) (pilD) [Klebsiella pneumoniae strain KPLSX]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=871106 RBH05_RS12560 WP_004213441.1 2595953..2596753(+) (pilD) [Klebsiella pneumoniae strain KPLSX]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425