Detailed information NTG0870925

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q2342_RS20920
• Genome accession: NZ_CP132964
• Coordinates: 4260108..4260908 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 36
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4255108..4265908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q2342_RS20885 (Q2342_20885)	gspH	4255264..4255773 (+)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-
Q2342_RS20890 (Q2342_20890)	gspI	4255776..4256141 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
Q2342_RS20895 (Q2342_20895)	gspJ	4256138..4256734 (+)	597	WP_023286045.1	type II secretion system minor pseudopilin GspJ	-
Q2342_RS20900 (Q2342_20900)	gspK	4256731..4257717 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
Q2342_RS20905 (Q2342_20905)	gspL	4257704..4258897 (+)	1194	WP_021441216.1	type II secretion system protein GspL	-
Q2342_RS20910 (Q2342_20910)	-	4258890..4259375 (+)	486	WP_004151943.1	type II secretion system protein M	-
Q2342_RS20915 (Q2342_20915)	-	4259365..4260111 (+)	747	WP_004145897.1	type II secretion system protein N	-
Q2342_RS20920 (Q2342_20920)	pilD	4260108..4260908 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
Q2342_RS20925 (Q2342_20925)	hrpB	4260956..4263385 (-)	2430	WP_023286043.1	ATP-dependent helicase HrpB	-
Q2342_RS20930 (Q2342_20930)	thpR	4263458..4263994 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
Q2342_RS20935 (Q2342_20935)	sfsA	4263994..4264710 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
Q2342_RS20940 (Q2342_20940)	dksA	4264873..4265328 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=870925 Q2342_RS20920 WP_004145898.1 4260108..4260908(+) (pilD) [Klebsiella pneumoniae strain 36]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870925 Q2342_RS20920 WP_004145898.1 4260108..4260908(+) (pilD) [Klebsiella pneumoniae strain 36]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425