Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RBB89_RS26520 Genome accession   NZ_CP132949
Coordinates   5657443..5658000 (+) Length   185 a.a.
NCBI ID   WP_003125211.1    Uniprot ID   A0A6A9K9C7
Organism   Pseudomonas aeruginosa strain IPA34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5652443..5663000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB89_RS26500 (RBB89_26505) pilR 5653719..5655056 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  RBB89_RS26505 (RBB89_26510) thiO 5655102..5656196 (-) 1095 WP_088376838.1 glycine oxidase ThiO -
  RBB89_RS26510 (RBB89_26515) - 5656331..5656840 (+) 510 WP_033976381.1 Tfp pilus assembly protein FimT/FimU -
  RBB89_RS26515 (RBB89_26520) - 5656946..5657452 (+) 507 WP_003134935.1 Tfp pilus assembly protein FimT/FimU -
  RBB89_RS26520 (RBB89_26525) pilV 5657443..5658000 (+) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  RBB89_RS26525 (RBB89_26530) pilW 5657997..5658821 (+) 825 WP_033976380.1 type 4a pilus minor pilin PilW -
  RBB89_RS26530 (RBB89_26535) pilX 5658818..5659405 (+) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  RBB89_RS26535 (RBB89_26540) pilY1 5659417..5662902 (+) 3486 WP_088376618.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20087.19 Da        Isoelectric Point: 8.2171

>NTDB_id=870827 RBB89_RS26520 WP_003125211.1 5657443..5658000(+) (pilV) [Pseudomonas aeruginosa strain IPA34]
MLLKSRHRSLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=870827 RBB89_RS26520 WP_003125211.1 5657443..5658000(+) (pilV) [Pseudomonas aeruginosa strain IPA34]
ATGCTATTGAAATCGCGACACAGGTCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGTACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGTGCCGATACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9K9C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989