Detailed information NTG0870795

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RAN66_RS21370
• Genome accession: NZ_CP132946
• Coordinates: 4371333..4372133 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 43
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4366333..4377133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAN66_RS21335 (RAN66_21315)	gspH	4366489..4367004 (+)	516	WP_101972054.1	type II secretion system minor pseudopilin GspH	-
RAN66_RS21340 (RAN66_21320)	gspI	4367001..4367366 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
RAN66_RS21345 (RAN66_21325)	gspJ	4367363..4367959 (+)	597	WP_306712611.1	type II secretion system minor pseudopilin GspJ	-
RAN66_RS21350 (RAN66_21330)	gspK	4367956..4368942 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
RAN66_RS21355 (RAN66_21335)	gspL	4368929..4370122 (+)	1194	WP_306712612.1	type II secretion system protein GspL	-
RAN66_RS21360 (RAN66_21340)	-	4370115..4370600 (+)	486	WP_004145896.1	type II secretion system protein M	-
RAN66_RS21365 (RAN66_21345)	-	4370590..4371336 (+)	747	WP_004145897.1	type II secretion system protein N	-
RAN66_RS21370 (RAN66_21350)	pilD	4371333..4372133 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
RAN66_RS21375 (RAN66_21355)	hrpB	4372181..4374610 (-)	2430	WP_020804570.1	ATP-dependent helicase HrpB	-
RAN66_RS21380 (RAN66_21360)	thpR	4374683..4375219 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
RAN66_RS21385 (RAN66_21365)	sfsA	4375219..4375935 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RAN66_RS21390 (RAN66_21370)	dksA	4376098..4376553 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=870795 RAN66_RS21370 WP_004145898.1 4371333..4372133(+) (pilD) [Klebsiella pneumoniae strain 43]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870795 RAN66_RS21370 WP_004145898.1 4371333..4372133(+) (pilD) [Klebsiella pneumoniae strain 43]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425