Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RBB55_RS16415 Genome accession   NZ_CP132915
Coordinates   3408556..3409083 (-) Length   175 a.a.
NCBI ID   WP_004833663.1    Uniprot ID   A0A0J8UZZ4
Organism   Acinetobacter baumannii strain A207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3403556..3414083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS16395 (RBB55_16420) - 3403745..3404620 (-) 876 WP_002125614.1 hypothetical protein -
  RBB55_RS16400 (RBB55_16425) aroB 3404636..3405718 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  RBB55_RS16405 (RBB55_16430) aroK 3405747..3406316 (-) 570 WP_000643712.1 shikimate kinase AroK -
  RBB55_RS16410 (RBB55_16435) pilQ 3406328..3408493 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  RBB55_RS16415 (RBB55_16440) pilP 3408556..3409083 (-) 528 WP_004833663.1 pilus assembly protein PilP Machinery gene
  RBB55_RS16420 (RBB55_16445) pilO 3409094..3409834 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RBB55_RS16425 (RBB55_16450) pilN 3409831..3410472 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  RBB55_RS16430 (RBB55_16455) pilM 3410472..3411530 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19465.70 Da        Isoelectric Point: 8.9898

>NTDB_id=870758 RBB55_RS16415 WP_004833663.1 3408556..3409083(-) (pilP) [Acinetobacter baumannii strain A207]
MKIKQITLYVLACTVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTLVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=870758 RBB55_RS16415 WP_004833663.1 3408556..3409083(-) (pilP) [Acinetobacter baumannii strain A207]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTACTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCTTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTGGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UZZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709