Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RBB55_RS16425 Genome accession   NZ_CP132915
Coordinates   3409831..3410472 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain A207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404831..3415472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS16405 (RBB55_16430) aroK 3405747..3406316 (-) 570 WP_000643712.1 shikimate kinase AroK -
  RBB55_RS16410 (RBB55_16435) pilQ 3406328..3408493 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  RBB55_RS16415 (RBB55_16440) pilP 3408556..3409083 (-) 528 WP_004833663.1 pilus assembly protein PilP Machinery gene
  RBB55_RS16420 (RBB55_16445) pilO 3409094..3409834 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RBB55_RS16425 (RBB55_16450) pilN 3409831..3410472 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  RBB55_RS16430 (RBB55_16455) pilM 3410472..3411530 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RBB55_RS16435 (RBB55_16460) ponA 3411692..3414247 (+) 2556 WP_377802857.1 penicillin-binding protein PBP1a -
  RBB55_RS16440 (RBB55_16465) - 3414265..3415089 (-) 825 WP_002068938.1 putative RNA methyltransferase -
  RBB55_RS16445 (RBB55_16470) - 3415092..3415424 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=870760 RBB55_RS16425 WP_000201224.1 3409831..3410472(-) (pilN) [Acinetobacter baumannii strain A207]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=870760 RBB55_RS16425 WP_000201224.1 3409831..3410472(-) (pilN) [Acinetobacter baumannii strain A207]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTGGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704