Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RBB55_RS08105 Genome accession   NZ_CP132915
Coordinates   1671677..1672057 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A207     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1666677..1677057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS08075 (RBB55_08090) kdsB 1667580..1668341 (+) 762 WP_004835301.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RBB55_RS08080 (RBB55_08095) - 1668353..1669333 (+) 981 WP_004835299.1 DNA polymerase III, delta' subunit -
  RBB55_RS08085 (RBB55_08100) - 1669345..1669686 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  RBB55_RS08090 (RBB55_08105) - 1669704..1670477 (+) 774 WP_000497302.1 TatD family hydrolase -
  RBB55_RS08095 (RBB55_08110) - 1670515..1671123 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  RBB55_RS08100 (RBB55_08115) - 1671133..1671687 (+) 555 WP_000841373.1 type II secretion system protein -
  RBB55_RS08105 (RBB55_08120) xcpV 1671677..1672057 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  RBB55_RS08110 (RBB55_08125) xcpW 1672057..1672758 (+) 702 WP_002125088.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RBB55_RS08115 (RBB55_08130) gspK 1672758..1673717 (+) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  RBB55_RS08120 (RBB55_08135) - 1673947..1674543 (+) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  RBB55_RS08125 (RBB55_08140) ung 1674594..1675307 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  RBB55_RS08130 (RBB55_08145) - 1675304..1676428 (+) 1125 WP_086373655.1 enoyl-CoA hydratase/isomerase family protein -
  RBB55_RS08135 (RBB55_08150) tadA 1676435..1676938 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=870740 RBB55_RS08105 WP_000836911.1 1671677..1672057(+) (xcpV) [Acinetobacter baumannii strain A207]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=870740 RBB55_RS08105 WP_000836911.1 1671677..1672057(+) (xcpV) [Acinetobacter baumannii strain A207]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1