Detailed information NTG0870741

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: RBB55_RS08110
• Genome accession: NZ_CP132915
• Coordinates: 1672057..1672758 (+)
• Length: 233 a.a.
• NCBI ID: WP_002125088.1
• Uniprot ID: A0A3R9SVL1
• Organism: Acinetobacter baumannii strain A207
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1667057..1677758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBB55_RS08075 (RBB55_08090)	kdsB	1667580..1668341 (+)	762	WP_004835301.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RBB55_RS08080 (RBB55_08095)	-	1668353..1669333 (+)	981	WP_004835299.1	DNA polymerase III, delta' subunit	-
RBB55_RS08085 (RBB55_08100)	-	1669345..1669686 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
RBB55_RS08090 (RBB55_08105)	-	1669704..1670477 (+)	774	WP_000497302.1	TatD family hydrolase	-
RBB55_RS08095 (RBB55_08110)	-	1670515..1671123 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RBB55_RS08100 (RBB55_08115)	-	1671133..1671687 (+)	555	WP_000841373.1	type II secretion system protein	-
RBB55_RS08105 (RBB55_08120)	xcpV	1671677..1672057 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
RBB55_RS08110 (RBB55_08125)	xcpW	1672057..1672758 (+)	702	WP_002125088.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RBB55_RS08115 (RBB55_08130)	gspK	1672758..1673717 (+)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
RBB55_RS08120 (RBB55_08135)	-	1673947..1674543 (+)	597	WP_000908452.1	6-carboxytetrahydropterin synthase	-
RBB55_RS08125 (RBB55_08140)	ung	1674594..1675307 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
RBB55_RS08130 (RBB55_08145)	-	1675304..1676428 (+)	1125	WP_086373655.1	enoyl-CoA hydratase/isomerase family protein	-
RBB55_RS08135 (RBB55_08150)	tadA	1676435..1676938 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
RBB55_RS08140 (RBB55_08155)	-	1677008..1677451 (+)	444	WP_046127748.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26647.60 Da
• Isoelectric Point: 9.5501

>NTDB_id=870741 RBB55_RS08110 WP_002125088.1 1672057..1672758(+) (xcpW) [Acinetobacter baumannii strain A207]
MIKNKYIHIRSFAARFAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=870741 RBB55_RS08110 WP_002125088.1 1672057..1672758(+) (xcpW) [Acinetobacter baumannii strain A207]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCTTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A3R9SVL1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987