Detailed information NTG0870724

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RBB55_RS01580
• Genome accession: NZ_CP132915
• Coordinates: 326956..327816 (-)
• Length: 286 a.a.
• NCBI ID: WP_002126490.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain A207
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 321956..332816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBB55_RS01555 (RBB55_01555)	-	322847..324157 (+)	1311	WP_002126504.1	tetratricopeptide repeat protein	-
RBB55_RS01560 (RBB55_01560)	-	324234..324560 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RBB55_RS01565 (RBB55_01565)	rlmB	324662..325411 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RBB55_RS01570 (RBB55_01570)	-	325447..326361 (+)	915	WP_002126491.1	DMT family transporter	-
RBB55_RS01575 (RBB55_01575)	coaE	326358..326954 (-)	597	WP_002126478.1	dephospho-CoA kinase	-
RBB55_RS01580 (RBB55_01580)	pilD	326956..327816 (-)	861	WP_002126490.1	A24 family peptidase	Machinery gene
RBB55_RS01585 (RBB55_01585)	pilC	327816..329042 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
RBB55_RS01590 (RBB55_01590)	pilB	329072..330784 (-)	1713	WP_001274979.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RBB55_RS01595 (RBB55_01595)	tpiA	331075..331869 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
RBB55_RS01600 (RBB55_01600)	secG	331882..332211 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32086.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=870724 RBB55_RS01580 WP_002126490.1 326956..327816(-) (pilD) [Acinetobacter baumannii strain A207]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLATLGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=870724 RBB55_RS01580 WP_002126490.1 326956..327816(-) (pilD) [Acinetobacter baumannii strain A207]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCCGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAACATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437