Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   RA292_RS18640 Genome accession   NZ_CP132912
Coordinates   3616390..3616509 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3611390..3621509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS18615 albG 3611554..3612255 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  RA292_RS18620 ywhL 3612261..3613637 (-) 1377 WP_003244415.1 YncE family protein -
  RA292_RS18625 ywhK 3613676..3615031 (-) 1356 WP_003227552.1 YncE family protein -
  RA292_RS18630 - 3615028..3615258 (-) 231 WP_009968328.1 hypothetical protein -
  RA292_RS18635 rapF 3615261..3616406 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  RA292_RS18640 phrF 3616390..3616509 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  RA292_RS18645 ywhH 3616608..3617081 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  RA292_RS18650 speB 3617113..3617985 (-) 873 WP_003227545.1 agmatinase -
  RA292_RS18655 speE 3618046..3618876 (-) 831 WP_003227543.1 spermidine synthase -
  RA292_RS18660 pbpG 3619078..3621153 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=870682 RA292_RS18640 WP_009968329.1 3616390..3616509(+) (phrF) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=870682 RA292_RS18640 WP_009968329.1 3616390..3616509(+) (phrF) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487