Detailed information NTG0870359

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA201_RS21125
• Genome accession: NZ_CP132713
• Coordinates: 4258206..4259006 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 5764
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4253206..4264006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA201_RS21090 (RA201_21075)	gspH	4253362..4253877 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
RA201_RS21095 (RA201_21080)	gspI	4253874..4254239 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA201_RS21100 (RA201_21085)	gspJ	4254236..4254832 (+)	597	WP_023302298.1	type II secretion system minor pseudopilin GspJ	-
RA201_RS21105 (RA201_21090)	gspK	4254829..4255815 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
RA201_RS21110 (RA201_21095)	gspL	4255802..4256995 (+)	1194	WP_029498035.1	type II secretion system protein GspL	-
RA201_RS21115 (RA201_21100)	-	4256988..4257473 (+)	486	WP_004145896.1	type II secretion system protein M	-
RA201_RS21120 (RA201_21105)	-	4257463..4258209 (+)	747	WP_004145897.1	type II secretion system protein N	-
RA201_RS21125 (RA201_21110)	pilD	4258206..4259006 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
RA201_RS21130 (RA201_21115)	hrpB	4259054..4261483 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
RA201_RS21135 (RA201_21120)	thpR	4261556..4262092 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
RA201_RS21140 (RA201_21125)	sfsA	4262092..4262808 (+)	717	WP_023342992.1	DNA/RNA nuclease SfsA	-
RA201_RS21145 (RA201_21130)	dksA	4262971..4263426 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=870359 RA201_RS21125 WP_004145898.1 4258206..4259006(+) (pilD) [Klebsiella pneumoniae strain 5764]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870359 RA201_RS21125 WP_004145898.1 4258206..4259006(+) (pilD) [Klebsiella pneumoniae strain 5764]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425