Detailed information NTG0870335

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA187_RS20880
• Genome accession: NZ_CP132709
• Coordinates: 4241035..4241835 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain 5881
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4236035..4246835

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA187_RS20845 (RA187_20830)	gspH	4236191..4236706 (+)	516	WP_004177384.1	type II secretion system minor pseudopilin GspH	-
RA187_RS20850 (RA187_20835)	gspI	4236703..4237068 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA187_RS20855 (RA187_20840)	gspJ	4237065..4237661 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
RA187_RS20860 (RA187_20845)	gspK	4237658..4238644 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
RA187_RS20865 (RA187_20850)	gspL	4238631..4239824 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
RA187_RS20870 (RA187_20855)	-	4239817..4240302 (+)	486	WP_004145896.1	type II secretion system protein M	-
RA187_RS20875 (RA187_20860)	-	4240292..4241038 (+)	747	WP_004145897.1	type II secretion system protein N	-
RA187_RS20880 (RA187_20865)	pilD	4241035..4241835 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
RA187_RS20885 (RA187_20870)	hrpB	4241883..4244312 (-)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
RA187_RS20890 (RA187_20875)	thpR	4244385..4244921 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
RA187_RS20895 (RA187_20880)	sfsA	4244921..4245637 (+)	717	WP_004177390.1	DNA/RNA nuclease SfsA	-
RA187_RS20900 (RA187_20885)	dksA	4245800..4246255 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=870335 RA187_RS20880 WP_004191960.1 4241035..4241835(+) (pilD) [Klebsiella pneumoniae strain 5881]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=870335 RA187_RS20880 WP_004191960.1 4241035..4241835(+) (pilD) [Klebsiella pneumoniae strain 5881]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421