Detailed information NTG0870263

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA188_RS20865
• Genome accession: NZ_CP132694
• Coordinates: 4207633..4208433 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 13765
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4202633..4213433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA188_RS20830 (RA188_20810)	gspH	4202789..4203304 (+)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-
RA188_RS20835 (RA188_20815)	gspI	4203301..4203666 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA188_RS20840 (RA188_20820)	gspJ	4203663..4204259 (+)	597	WP_040237569.1	type II secretion system minor pseudopilin GspJ	-
RA188_RS20845 (RA188_20825)	gspK	4204256..4205242 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
RA188_RS20850 (RA188_20830)	gspL	4205229..4206422 (+)	1194	WP_220676675.1	type II secretion system protein GspL	-
RA188_RS20855 (RA188_20835)	-	4206415..4206900 (+)	486	WP_004151943.1	type II secretion system protein M	-
RA188_RS20860 (RA188_20840)	-	4206890..4207636 (+)	747	WP_004145897.1	type II secretion system protein N	-
RA188_RS20865 (RA188_20845)	pilD	4207633..4208433 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
RA188_RS20870 (RA188_20850)	hrpB	4208481..4210910 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
RA188_RS20875 (RA188_20855)	thpR	4210983..4211519 (+)	537	WP_040152504.1	RNA 2',3'-cyclic phosphodiesterase	-
RA188_RS20880 (RA188_20860)	sfsA	4211519..4212235 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RA188_RS20885 (RA188_20865)	dksA	4212398..4212853 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=870263 RA188_RS20865 WP_004145898.1 4207633..4208433(+) (pilD) [Klebsiella pneumoniae strain 13765]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870263 RA188_RS20865 WP_004145898.1 4207633..4208433(+) (pilD) [Klebsiella pneumoniae strain 13765]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425