Detailed information NTG0870215

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA194_RS21630
• Genome accession: NZ_CP132688
• Coordinates: 4372502..4373302 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 15017
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4367502..4378302

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA194_RS21595 (RA194_21575)	gspH	4367658..4368173 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
RA194_RS21600 (RA194_21580)	gspI	4368170..4368535 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA194_RS21605 (RA194_21585)	gspJ	4368532..4369128 (+)	597	WP_023279276.1	type II secretion system minor pseudopilin GspJ	-
RA194_RS21610 (RA194_21590)	gspK	4369125..4370111 (+)	987	WP_023279277.1	type II secretion system minor pseudopilin GspK	-
RA194_RS21615 (RA194_21595)	gspL	4370098..4371291 (+)	1194	WP_021441216.1	type II secretion system protein GspL	-
RA194_RS21620 (RA194_21600)	-	4371284..4371769 (+)	486	WP_004151943.1	type II secretion system protein M	-
RA194_RS21625 (RA194_21605)	-	4371759..4372505 (+)	747	WP_004145897.1	type II secretion system protein N	-
RA194_RS21630 (RA194_21610)	pilD	4372502..4373302 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
RA194_RS21635 (RA194_21615)	hrpB	4373350..4375779 (-)	2430	WP_023300747.1	ATP-dependent helicase HrpB	-
RA194_RS21640 (RA194_21620)	thpR	4375852..4376388 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
RA194_RS21645 (RA194_21625)	sfsA	4376388..4377104 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RA194_RS21650 (RA194_21630)	dksA	4377267..4377722 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=870215 RA194_RS21630 WP_004145898.1 4372502..4373302(+) (pilD) [Klebsiella pneumoniae strain 15017]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870215 RA194_RS21630 WP_004145898.1 4372502..4373302(+) (pilD) [Klebsiella pneumoniae strain 15017]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425