Detailed information NTG0870146

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA190_RS21520
• Genome accession: NZ_CP132675
• Coordinates: 4329720..4330520 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain 363389
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4324720..4335520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA190_RS21485 (RA190_21465)	gspH	4324876..4325391 (+)	516	WP_020804560.1	type II secretion system minor pseudopilin GspH	-
RA190_RS21490 (RA190_21470)	gspI	4325388..4325753 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA190_RS21495 (RA190_21475)	gspJ	4325750..4326346 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
RA190_RS21500 (RA190_21480)	gspK	4326343..4327329 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
RA190_RS21505 (RA190_21485)	gspL	4327316..4328509 (+)	1194	WP_020804558.1	type II secretion system protein GspL	-
RA190_RS21510 (RA190_21490)	-	4328502..4328987 (+)	486	WP_004145896.1	type II secretion system protein M	-
RA190_RS21515 (RA190_21495)	-	4328977..4329723 (+)	747	WP_004145897.1	type II secretion system protein N	-
RA190_RS21520 (RA190_21500)	pilD	4329720..4330520 (+)	801	WP_004213441.1	A24 family peptidase	Machinery gene
RA190_RS21525 (RA190_21505)	hrpB	4330568..4332997 (-)	2430	WP_020804570.1	ATP-dependent helicase HrpB	-
RA190_RS21530 (RA190_21510)	thpR	4333070..4333606 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
RA190_RS21535 (RA190_21515)	sfsA	4333606..4334322 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RA190_RS21540 (RA190_21520)	dksA	4334485..4334940 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=870146 RA190_RS21520 WP_004213441.1 4329720..4330520(+) (pilD) [Klebsiella pneumoniae strain 363389]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870146 RA190_RS21520 WP_004213441.1 4329720..4330520(+) (pilD) [Klebsiella pneumoniae strain 363389]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425