Detailed information NTG0870122

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA209_RS21465
• Genome accession: NZ_CP132673
• Coordinates: 4307687..4308487 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain 371661
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4302687..4313487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA209_RS21430 (RA209_21405)	gspH	4302843..4303358 (+)	516	WP_020804560.1	type II secretion system minor pseudopilin GspH	-
RA209_RS21435 (RA209_21410)	gspI	4303355..4303720 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA209_RS21440 (RA209_21415)	gspJ	4303717..4304313 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
RA209_RS21445 (RA209_21420)	gspK	4304310..4305296 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
RA209_RS21450 (RA209_21425)	gspL	4305283..4306476 (+)	1194	WP_020804558.1	type II secretion system protein GspL	-
RA209_RS21455 (RA209_21430)	-	4306469..4306954 (+)	486	WP_004145896.1	type II secretion system protein M	-
RA209_RS21460 (RA209_21435)	-	4306944..4307690 (+)	747	WP_004145897.1	type II secretion system protein N	-
RA209_RS21465 (RA209_21440)	pilD	4307687..4308487 (+)	801	WP_004213441.1	A24 family peptidase	Machinery gene
RA209_RS21470 (RA209_21445)	hrpB	4308535..4310964 (-)	2430	WP_020804570.1	ATP-dependent helicase HrpB	-
RA209_RS21475 (RA209_21450)	thpR	4311037..4311573 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
RA209_RS21480 (RA209_21455)	sfsA	4311573..4312289 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RA209_RS21485 (RA209_21460)	dksA	4312452..4312907 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=870122 RA209_RS21465 WP_004213441.1 4307687..4308487(+) (pilD) [Klebsiella pneumoniae strain 371661]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870122 RA209_RS21465 WP_004213441.1 4307687..4308487(+) (pilD) [Klebsiella pneumoniae strain 371661]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425