Detailed information NTG0870099

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA185_RS20890
• Genome accession: NZ_CP132670
• Coordinates: 4248486..4249286 (+)
• Length: 266 a.a.
• NCBI ID: WP_021441214.1
• Uniprot ID: A0A4V0HF22
• Organism: Klebsiella pneumoniae strain 387608
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4243486..4254286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA185_RS20855 (RA185_20835)	gspH	4243642..4244151 (+)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-
RA185_RS20860 (RA185_20840)	gspI	4244154..4244519 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA185_RS20865 (RA185_20845)	gspJ	4244516..4245112 (+)	597	WP_032428541.1	type II secretion system minor pseudopilin GspJ	-
RA185_RS20870 (RA185_20850)	gspK	4245109..4246095 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
RA185_RS20875 (RA185_20855)	gspL	4246082..4247275 (+)	1194	WP_021441216.1	type II secretion system protein GspL	-
RA185_RS20880 (RA185_20860)	-	4247268..4247753 (+)	486	WP_004151943.1	type II secretion system protein M	-
RA185_RS20885 (RA185_20865)	-	4247743..4248489 (+)	747	WP_021441215.1	type II secretion system protein N	-
RA185_RS20890 (RA185_20870)	pilD	4248486..4249286 (+)	801	WP_021441214.1	A24 family peptidase	Machinery gene
RA185_RS20895 (RA185_20875)	hrpB	4249334..4251763 (-)	2430	WP_239619641.1	ATP-dependent helicase HrpB	-
RA185_RS20900 (RA185_20880)	thpR	4251836..4252372 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
RA185_RS20905 (RA185_20885)	sfsA	4252372..4253088 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RA185_RS20910 (RA185_20890)	dksA	4253251..4253706 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=870099 RA185_RS20890 WP_021441214.1 4248486..4249286(+) (pilD) [Klebsiella pneumoniae strain 387608]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
SRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870099 RA185_RS20890 WP_021441214.1 4248486..4249286(+) (pilD) [Klebsiella pneumoniae strain 387608]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
AGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
TCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

3D structure

• AlphaFold DB: A0A4V0HF22

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425