Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   WHU44_RS13170 Genome accession   NZ_CP148319
Coordinates   2620865..2622274 (-) Length   469 a.a.
NCBI ID   WP_001188777.1    Uniprot ID   Q32A39
Organism   Escherichia coli strain Z1323HEC0494     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2615865..2627274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU44_RS13145 (WHU44_13145) yihA 2617171..2617803 (-) 633 WP_000183344.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  WHU44_RS13150 (WHU44_13150) - 2618100..2618266 (+) 167 Protein_2559 hypothetical protein -
  WHU44_RS13155 (WHU44_13155) yihI 2618385..2618891 (+) 507 WP_001301646.1 Der GTPase-activating protein YihI -
  WHU44_RS13160 (WHU44_13160) hemN 2619080..2620453 (+) 1374 WP_000116090.1 oxygen-independent coproporphyrinogen III oxidase -
  WHU44_RS13165 (WHU44_13165) yshB 2620643..2620753 (-) 111 WP_000893994.1 YshB family small membrane protein -
  WHU44_RS13170 (WHU44_13170) luxO 2620865..2622274 (-) 1410 WP_001188777.1 nitrogen regulation protein NR(I) Regulator
  WHU44_RS13175 (WHU44_13175) glnL 2622286..2623335 (-) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  WHU44_RS13180 (WHU44_13180) glnA 2623509..2624918 (-) 1410 WP_001271717.1 glutamate--ammonia ligase -
  WHU44_RS13185 (WHU44_13185) typA 2625291..2627114 (+) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52254.74 Da        Isoelectric Point: 6.4561

>NTDB_id=870089 WHU44_RS13170 WP_001188777.1 2620865..2622274(-) (luxO) [Escherichia coli strain Z1323HEC0494]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=870089 WHU44_RS13170 WP_001188777.1 2620865..2622274(-) (luxO) [Escherichia coli strain Z1323HEC0494]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACAACATTTGAGAACGGCGCGGAGGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCACTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCATTTATCGCTCTGAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGCGGTACATTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGGGTGCAGGAAGGTAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGC
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGAGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GTTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGTTGGGCGACGCTTCTTGCGCAGTGGGCAGACAGAGCGCTACGTTCCGGTCATCAAAATCTGCTTTCCGAAGCGCAGCC
AGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAGGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32A39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392