Detailed information NTG0870075

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA206_RS21275
• Genome accession: NZ_CP132669
• Coordinates: 4303497..4304297 (+)
• Length: 266 a.a.
• NCBI ID: WP_038806672.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 463908
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4298497..4309297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA206_RS21240 (RA206_21225)	gspH	4298653..4299162 (+)	510	WP_038806668.1	type II secretion system minor pseudopilin GspH	-
RA206_RS21245 (RA206_21230)	gspI	4299165..4299530 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA206_RS21250 (RA206_21235)	gspJ	4299527..4300123 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
RA206_RS21255 (RA206_21240)	gspK	4300120..4301106 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
RA206_RS21260 (RA206_21245)	gspL	4301093..4302286 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
RA206_RS21265 (RA206_21250)	-	4302279..4302764 (+)	486	WP_038806671.1	type II secretion system protein M	-
RA206_RS21270 (RA206_21255)	-	4302754..4303500 (+)	747	WP_004145897.1	type II secretion system protein N	-
RA206_RS21275 (RA206_21260)	pilD	4303497..4304297 (+)	801	WP_038806672.1	A24 family peptidase	Machinery gene
RA206_RS21280 (RA206_21265)	hrpB	4304345..4306774 (-)	2430	WP_038806673.1	ATP-dependent helicase HrpB	-
RA206_RS21285 (RA206_21270)	thpR	4306847..4307383 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
RA206_RS21290 (RA206_21275)	sfsA	4307383..4308099 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RA206_RS21295 (RA206_21280)	dksA	4308262..4308717 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29359.97 Da
• Isoelectric Point: 8.6099

>NTDB_id=870075 RA206_RS21275 WP_038806672.1 4303497..4304297(+) (pilD) [Klebsiella pneumoniae strain 463908]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDPLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=870075 RA206_RS21275 WP_038806672.1 4303497..4304297(+) (pilD) [Klebsiella pneumoniae strain 463908]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCCCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTAGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421