Detailed information NTG0870005

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA195_RS22885
• Genome accession: NZ_CP132653
• Coordinates: 4549172..4549972 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 517485
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4544172..4554972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA195_RS22850 (RA195_22825)	gspH	4544328..4544843 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
RA195_RS22855 (RA195_22830)	gspI	4544840..4545205 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
RA195_RS22860 (RA195_22835)	gspJ	4545202..4545798 (+)	597	WP_004191953.1	type II secretion system minor pseudopilin GspJ	-
RA195_RS22865 (RA195_22840)	gspK	4545795..4546781 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
RA195_RS22870 (RA195_22845)	gspL	4546768..4547961 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
RA195_RS22875 (RA195_22850)	-	4547954..4548439 (+)	486	WP_004151943.1	type II secretion system protein M	-
RA195_RS22880 (RA195_22855)	-	4548429..4549175 (+)	747	WP_102023788.1	type II secretion system protein N	-
RA195_RS22885 (RA195_22860)	pilD	4549172..4549972 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
RA195_RS22890 (RA195_22865)	hrpB	4550020..4552449 (-)	2430	WP_117260186.1	ATP-dependent helicase HrpB	-
RA195_RS22895 (RA195_22870)	thpR	4552522..4553058 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
RA195_RS22900 (RA195_22875)	sfsA	4553058..4553774 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RA195_RS22905 (RA195_22880)	dksA	4553937..4554392 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=870005 RA195_RS22885 WP_004145898.1 4549172..4549972(+) (pilD) [Klebsiella pneumoniae strain 517485]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870005 RA195_RS22885 WP_004145898.1 4549172..4549972(+) (pilD) [Klebsiella pneumoniae strain 517485]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425