Detailed information NTG0869980

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA207_RS21230
• Genome accession: NZ_CP132651
• Coordinates: 4293407..4294207 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 544090
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4288407..4299207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA207_RS21195 (RA207_21175)	gspH	4288563..4289078 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
RA207_RS21200 (RA207_21180)	gspI	4289075..4289440 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA207_RS21205 (RA207_21185)	gspJ	4289437..4290033 (+)	597	WP_032419387.1	type II secretion system minor pseudopilin GspJ	-
RA207_RS21210 (RA207_21190)	gspK	4290030..4291016 (+)	987	WP_306504889.1	type II secretion system minor pseudopilin GspK	-
RA207_RS21215 (RA207_21195)	gspL	4291003..4292196 (+)	1194	WP_306504891.1	type II secretion system protein GspL	-
RA207_RS21220 (RA207_21200)	-	4292189..4292674 (+)	486	WP_004145896.1	type II secretion system protein M	-
RA207_RS21225 (RA207_21205)	-	4292664..4293410 (+)	747	WP_004145897.1	type II secretion system protein N	-
RA207_RS21230 (RA207_21210)	pilD	4293407..4294207 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
RA207_RS21235 (RA207_21215)	hrpB	4294255..4296684 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
RA207_RS21240 (RA207_21220)	thpR	4296757..4297293 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
RA207_RS21245 (RA207_21225)	sfsA	4297293..4298009 (+)	717	WP_004177390.1	DNA/RNA nuclease SfsA	-
RA207_RS21250 (RA207_21230)	dksA	4298172..4298627 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=869980 RA207_RS21230 WP_004145898.1 4293407..4294207(+) (pilD) [Klebsiella pneumoniae strain 544090]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=869980 RA207_RS21230 WP_004145898.1 4293407..4294207(+) (pilD) [Klebsiella pneumoniae strain 544090]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425