Detailed information NTG0086985

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ50_RS22415
• Genome accession: NZ_AP027523
• Coordinates: 4603494..4604519 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LR-33
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4598494..4609519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ50_RS22395 (VEE12_42970)	metJ	4599555..4599872 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
AABJ50_RS22400 (VEE12_42980)	yiiX	4600056..4600664 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
AABJ50_RS22405 (VEE12_42990)	rpmE	4600725..4600937 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ50_RS22410 (VEE12_43000)	priA	4601140..4603338 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
AABJ50_RS22415 (VEE12_43010)	cytR	4603494..4604519 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ50_RS22420 (VEE12_43020)	ftsN	4604611..4605570 (+)	960	WP_000068828.1	cell division protein FtsN	-
AABJ50_RS22425 (VEE12_43030)	hslV	4605663..4606193 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ50_RS22430 (VEE12_43040)	hslU	4606203..4607534 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AABJ50_RS22435 (VEE12_43050)	menA	4607601..4608527 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ50_RS22440 (VEE12_43060)	rraA	4608620..4609105 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ50_RS22445 (VEE12_43070)	zapB	4609190..4609435 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=86985 AABJ50_RS22415 WP_000644904.1 4603494..4604519(+) (cytR) [Escherichia coli strain LR-33]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=86985 AABJ50_RS22415 WP_000644904.1 4603494..4604519(+) (cytR) [Escherichia coli strain LR-33]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628