Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   K6J99_RS16935 Genome accession   NZ_AP024623
Coordinates   3221448..3222092 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3102     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3216448..3227092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J99_RS16900 (BsBEST3102_32390) mrpB 3217640..3218071 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  K6J99_RS16905 (BsBEST3102_32400) mrpC 3218071..3218412 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  K6J99_RS16910 (BsBEST3102_32410) mrpD 3218405..3219886 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  K6J99_RS16915 (BsBEST3102_32420) mrpE 3219892..3220368 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  K6J99_RS16920 (BsBEST3102_32430) mrpF 3220368..3220652 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  K6J99_RS16925 (BsBEST3102_32440) mnhG 3220636..3221010 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  K6J99_RS16930 (BsBEST3102_32450) yuxO 3221049..3221429 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  K6J99_RS16935 (BsBEST3102_32460) comA 3221448..3222092 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  K6J99_RS16940 comP 3222173..3224482 (-) 2310 WP_032723438.1 two-component system sensor histidine kinase ComP Regulator
  K6J99_RS16945 (BsBEST3102_32490) comX 3224497..3224664 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  K6J99_RS16950 (BsBEST3102_32500) comQ 3224652..3225551 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  K6J99_RS16955 (BsBEST3102_32510) degQ 3225736..3225876 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  K6J99_RS16960 - 3226098..3226223 (+) 126 WP_003228793.1 hypothetical protein -
  K6J99_RS16965 (BsBEST3102_32520) - 3226337..3226705 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=86970 K6J99_RS16935 WP_003220716.1 3221448..3222092(-) (comA) [Bacillus subtilis strain BEST3102]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=86970 K6J99_RS16935 WP_003220716.1 3221448..3222092(-) (comA) [Bacillus subtilis strain BEST3102]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment