Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | RA177_RS11335 | Genome accession | NZ_CP132599 |
| Coordinates | 2253192..2253527 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus safensis strain PL23A | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2248192..2258527
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RA177_RS11315 (RA177_11330) | gcvT | 2248671..2249768 (-) | 1098 | WP_247721556.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| RA177_RS11320 (RA177_11335) | - | 2250330..2252000 (+) | 1671 | WP_133744192.1 | DEAD/DEAH box helicase | - |
| RA177_RS11325 (RA177_11340) | - | 2252015..2252812 (+) | 798 | WP_198456924.1 | YqhG family protein | - |
| RA177_RS11330 (RA177_11345) | - | 2252994..2253158 (+) | 165 | WP_073206269.1 | anti-repressor SinI family protein | - |
| RA177_RS11335 (RA177_11350) | sinR | 2253192..2253527 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| RA177_RS11340 (RA177_11355) | tasA | 2253595..2254395 (-) | 801 | WP_024422970.1 | biofilm matrix protein TasA | - |
| RA177_RS11345 (RA177_11360) | sipW | 2254450..2255022 (-) | 573 | WP_024422971.1 | signal peptidase I SipW | - |
| RA177_RS11350 (RA177_11365) | tapA | 2255075..2255602 (-) | 528 | WP_103131952.1 | amyloid fiber anchoring/assembly protein TapA | - |
| RA177_RS11355 (RA177_11370) | - | 2255902..2256180 (+) | 279 | WP_171464609.1 | DUF3889 domain-containing protein | - |
| RA177_RS11360 (RA177_11375) | - | 2256215..2256409 (-) | 195 | WP_024422974.1 | YqzE family protein | - |
| RA177_RS11365 (RA177_11380) | - | 2256469..2256852 (-) | 384 | WP_103131951.1 | competence type IV pilus minor pilin ComGG | - |
| RA177_RS11370 (RA177_11385) | comGF | 2256849..2257376 (-) | 528 | WP_258011119.1 | competence type IV pilus minor pilin ComGF | - |
| RA177_RS11375 (RA177_11390) | comGE | 2257288..2257602 (-) | 315 | WP_073206282.1 | competence type IV pilus minor pilin ComGE | - |
| RA177_RS11380 (RA177_11395) | comGD | 2257586..2258032 (-) | 447 | WP_185853687.1 | competence type IV pilus minor pilin ComGD | - |
| RA177_RS11385 (RA177_11400) | comGC | 2258025..2258318 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=869593 RA177_RS11335 WP_024422969.1 2253192..2253527(+) (sinR) [Bacillus safensis strain PL23A]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=869593 RA177_RS11335 WP_024422969.1 2253192..2253527(+) (sinR) [Bacillus safensis strain PL23A]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |