Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   RA085_RS09130 Genome accession   NZ_CP132559
Coordinates   1859344..1859910 (-) Length   188 a.a.
NCBI ID   WP_041079011.1    Uniprot ID   A0A380HNJ5
Organism   Staphylococcus saprophyticus strain SZ.YL11     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854344..1864910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA085_RS09090 (RA085_09090) - 1854551..1855903 (-) 1353 WP_011303459.1 isochorismate synthase -
  RA085_RS09095 (RA085_09095) - 1856092..1857030 (+) 939 WP_047502489.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  RA085_RS09100 (RA085_09100) - 1857141..1857698 (-) 558 WP_002483730.1 GNAT family N-acetyltransferase -
  RA085_RS09105 (RA085_09105) - 1857876..1858088 (+) 213 WP_011303462.1 TM2 domain-containing protein -
  RA085_RS09110 (RA085_09110) - 1858209..1858298 (+) 90 WP_011303463.1 SAR1012 family small protein -
  RA085_RS09115 (RA085_09115) - 1858385..1858813 (-) 429 WP_002483731.1 organic hydroperoxide resistance protein -
  RA085_RS09130 (RA085_09130) comK/comK1 1859344..1859910 (-) 567 WP_041079011.1 competence protein ComK Regulator
  RA085_RS09135 (RA085_09135) - 1860163..1860381 (+) 219 WP_011303465.1 IDEAL domain-containing protein -
  RA085_RS09140 (RA085_09140) - 1860463..1861452 (-) 990 WP_002483734.1 lipoate--protein ligase -
  RA085_RS09145 (RA085_09145) - 1861653..1861838 (+) 186 WP_002483735.1 DUF2187 family protein -
  RA085_RS09150 (RA085_09150) - 1861844..1862446 (+) 603 WP_002483736.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RA085_RS09155 (RA085_09155) - 1863037..1864545 (-) 1509 WP_002483737.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 22118.54 Da        Isoelectric Point: 9.5133

>NTDB_id=869492 RA085_RS09130 WP_041079011.1 1859344..1859910(-) (comK/comK1) [Staphylococcus saprophyticus strain SZ.YL11]
MIQPYIIKKGDMVLQPCSLSTGKYEGSYLLKYKDDSKVLKERVPKIIDRSCRFYGSSYHFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVHQIKPLKEKKCKVTFVDNQTIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKPQLNIYEALAKYSLFENKS

Nucleotide


Download         Length: 567 bp        

>NTDB_id=869492 RA085_RS09130 WP_041079011.1 1859344..1859910(-) (comK/comK1) [Staphylococcus saprophyticus strain SZ.YL11]
ATGATTCAACCCTATATCATTAAAAAAGGGGATATGGTTTTACAACCATGCAGTTTATCAACTGGTAAGTATGAAGGTAG
TTATCTTTTAAAGTATAAGGATGACAGCAAAGTTCTAAAAGAACGTGTTCCAAAGATTATTGATCGATCGTGTAGATTTT
ATGGTAGTAGTTATCATTTTAAGAAAGAAGATACGATGAGAATTACTGGCATAAGCAGTAAACCCCCAATTTTATTTACT
CCACTTTTTCCTACTTATTTTTTCCCAACGCACTCTGATAGAAAAGAAGAAAATACTTGGATTAATATTCATTATGTTCA
CCAAATCAAACCACTAAAAGAAAAGAAATGTAAAGTGACATTTGTAGATAATCAAACAATTGTAGCTAACATTTCAGCAC
ATAGCATGCATCATCAATACCTAAATGGTATTTATTATTACTATATGATGGATAGGGCAGCAAGAGTTGCTACCTTTGAT
CCAGAATCTCCTATTGATTATACAAAACCTCAATTAAATATTTATGAAGCATTAGCAAAATATTCATTATTTGAAAATAA
ATCGTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380HNJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

54.891

97.872

0.537
  comK/comK1 Staphylococcus aureus N315

54.891

97.872

0.537