Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RA085_RS04005 Genome accession   NZ_CP132559
Coordinates   839810..840229 (+) Length   139 a.a.
NCBI ID   WP_037538032.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain SZ.YL11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 834810..845229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA085_RS03975 (RA085_03980) atpD 834926..836338 (+) 1413 WP_002482726.1 F0F1 ATP synthase subunit beta -
  RA085_RS03980 (RA085_03985) - 836358..836762 (+) 405 WP_002482727.1 F0F1 ATP synthase subunit epsilon -
  RA085_RS03985 (RA085_03990) - 837024..837257 (+) 234 WP_011302682.1 DUF1146 family protein -
  RA085_RS03990 (RA085_03995) murA 837364..838629 (+) 1266 WP_002482728.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RA085_RS03995 (RA085_04000) fabZ 838684..839121 (+) 438 WP_002482729.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RA085_RS04000 (RA085_04005) - 839179..839619 (-) 441 WP_002482730.1 YwpF-like family protein -
  RA085_RS04005 (RA085_04010) ssb 839810..840229 (+) 420 WP_037538032.1 single-stranded DNA-binding protein Machinery gene
  RA085_RS04010 (RA085_04015) - 840655..841371 (+) 717 WP_041080784.1 transglycosylase family protein -
  RA085_RS04015 (RA085_04020) tenA 841678..842367 (+) 690 WP_002482733.1 thiaminase II -
  RA085_RS04020 (RA085_04025) thiD 842360..843181 (+) 822 WP_002482734.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RA085_RS04025 (RA085_04030) thiM 843174..843965 (+) 792 WP_002482735.1 hydroxyethylthiazole kinase -
  RA085_RS04030 (RA085_04035) thiE 843965..844603 (+) 639 WP_002482736.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16100.49 Da        Isoelectric Point: 7.7651

>NTDB_id=869473 RA085_RS04005 WP_037538032.1 839810..840229(+) (ssb) [Staphylococcus saprophyticus strain SZ.YL11]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQNPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNVFKDINVQNNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=869473 RA085_RS04005 WP_037538032.1 839810..840229(+) (ssb) [Staphylococcus saprophyticus strain SZ.YL11]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAAACCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGTATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597