Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   RAL98_RS06895 Genome accession   NZ_CP132544
Coordinates   1355060..1355623 (-) Length   187 a.a.
NCBI ID   WP_251519447.1    Uniprot ID   -
Organism   Staphylococcus sp. HKU1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1350060..1360623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL98_RS06870 (RAL98_06845) - 1350255..1351154 (+) 900 WP_251519442.1 hypothetical protein -
  RAL98_RS06875 (RAL98_06850) - 1351574..1352932 (+) 1359 WP_251519443.1 TrkH family potassium uptake protein -
  RAL98_RS06880 (RAL98_06855) - 1353081..1354589 (+) 1509 WP_251519445.1 bifunctional metallophosphatase/5'-nucleotidase -
  RAL98_RS06895 (RAL98_06870) comK/comK1 1355060..1355623 (-) 564 WP_251519447.1 competence protein ComK Regulator
  RAL98_RS06900 (RAL98_06875) - 1355877..1356095 (+) 219 WP_251519449.1 IDEAL domain-containing protein -
  RAL98_RS06905 (RAL98_06880) - 1356174..1357163 (-) 990 WP_418128439.1 lipoate--protein ligase -
  RAL98_RS06910 (RAL98_06885) - 1357360..1357545 (+) 186 WP_251519453.1 YkvS family protein -
  RAL98_RS06915 (RAL98_06890) - 1357551..1358153 (+) 603 WP_251519455.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RAL98_RS06920 (RAL98_06895) - 1358278..1358520 (-) 243 WP_251519457.1 DUF3923 family protein -
  RAL98_RS06925 (RAL98_06900) - 1358650..1359783 (-) 1134 WP_251519459.1 CapA family protein -
  RAL98_RS06930 (RAL98_06905) - 1360162..1360482 (+) 321 WP_251519461.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22108.43 Da        Isoelectric Point: 9.2546

>NTDB_id=869381 RAL98_RS06895 WP_251519447.1 1355060..1355623(-) (comK/comK1) [Staphylococcus sp. HKU1]
MNQQYIIKKGDMVLQPCNLTIGPYAGTCIYRYQEDNYTVKDRTHKIIERSCRFYGSSYVFKKEDTIRITGINSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVSHIKPMKEKKCKVIFVDKQSITVNISAHSMQHQYLNGIYYYYMMDRAAKVATFD
PESPIDYSKSQINIYEALAKYSLFEQK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=869381 RAL98_RS06895 WP_251519447.1 1355060..1355623(-) (comK/comK1) [Staphylococcus sp. HKU1]
ATGAATCAACAATACATTATTAAAAAAGGAGACATGGTGCTCCAGCCATGTAATTTAACCATTGGCCCTTACGCAGGAAC
ATGTATTTACAGGTATCAAGAAGATAATTACACCGTAAAAGACCGTACACATAAAATAATAGAGAGGTCTTGCCGATTTT
ATGGTAGCAGTTATGTCTTTAAGAAAGAAGATACGATTCGAATTACAGGCATTAATAGTAAGCCCCCTATTTTATTCACT
CCACTTTTTCCTACTTATTTTTTCCCTACACACTCTGACAGAAAAGAAGAAAACACTTGGATTAACATTCATTACGTAAG
TCATATTAAGCCTATGAAAGAGAAAAAATGTAAAGTGATTTTCGTCGACAAACAATCTATCACAGTAAATATTTCAGCTC
ACAGTATGCAACATCAATATTTAAATGGCATTTACTATTATTATATGATGGATCGTGCAGCAAAAGTTGCAACTTTTGAT
CCCGAATCCCCTATTGATTATTCTAAATCTCAGATAAATATCTACGAAGCTTTAGCAAAATACTCATTGTTTGAACAAAA
GTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

52.459

97.861

0.513
  comK/comK1 Staphylococcus aureus N315

52.459

97.861

0.513