Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RAL98_RS04935 Genome accession   NZ_CP132544
Coordinates   964041..965411 (+) Length   456 a.a.
NCBI ID   WP_251518563.1    Uniprot ID   -
Organism   Staphylococcus sp. HKU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 959041..970411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL98_RS04915 (RAL98_04890) - 959244..959705 (+) 462 WP_251518555.1 CtsR family transcriptional regulator -
  RAL98_RS04920 (RAL98_04895) - 959722..960279 (+) 558 WP_251518557.1 UvrB/UvrC motif-containing protein -
  RAL98_RS04925 (RAL98_04900) - 960266..961276 (+) 1011 WP_251518559.1 protein arginine kinase -
  RAL98_RS04930 (RAL98_04905) - 961291..963759 (+) 2469 WP_251518561.1 ATP-dependent Clp protease ATP-binding subunit -
  RAL98_RS04935 (RAL98_04910) radA 964041..965411 (+) 1371 WP_251518563.1 DNA repair protein RadA Machinery gene
  RAL98_RS04940 (RAL98_04915) - 965533..966591 (+) 1059 WP_251943453.1 PIN/TRAM domain-containing protein -
  RAL98_RS04945 (RAL98_04920) gltX 966937..968394 (+) 1458 WP_251518565.1 glutamate--tRNA ligase -
  RAL98_RS04950 (RAL98_04925) cysE 968695..969345 (+) 651 WP_285813488.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50345.83 Da        Isoelectric Point: 7.7316

>NTDB_id=869378 RAL98_RS04935 WP_251518563.1 964041..965411(+) (radA) [Staphylococcus sp. HKU1]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEQKASTSPKHGVRSRENTAKVQKLNDIQQETTPRILSKSEEFN
RVLGGGIVNGSLVLIGGDPGIGKSTLLLQVCAALSQSHNVLYITGEESLSQTKLRAQRLEENSSNLNVFAETDLEIIHET
VKQTKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWQFPEDIKVIGVENVHDALKYAISK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=869378 RAL98_RS04935 WP_251518563.1 964041..965411(+) (radA) [Staphylococcus sp. HKU1]
TTGGCCAAGAAAAAAGTAATTTTTGAATGTATGGCATGTGGTTACCAGTCACCGAAATGGATGGGTAAATGTCCTAACTG
TGGCGCATGGAACCAAATGGAAGAAATAGTAGAACAAAAGGCGAGTACTAGTCCAAAACATGGCGTGCGTAGTCGTGAAA
ACACAGCTAAAGTACAAAAGTTAAATGATATACAGCAAGAAACGACGCCACGTATATTGAGTAAATCGGAAGAATTCAAC
CGAGTACTTGGTGGCGGTATTGTAAATGGCTCTCTTGTGTTAATAGGTGGAGATCCTGGTATAGGGAAGTCTACTTTACT
TTTACAAGTCTGTGCAGCACTTTCTCAATCTCATAATGTGTTATACATTACGGGTGAGGAATCATTAAGCCAGACAAAAT
TGAGAGCACAGAGATTAGAAGAAAACTCAAGCAATCTAAATGTTTTTGCAGAGACGGATTTGGAAATTATTCATGAAACT
GTGAAACAAACGAAACCGGATTTACTCGTGGTCGATTCAATCCAAACAATCTTTCATCCGGAAATCAGTTCAGCACCAGG
TTCAGTTTCTCAAGTGAGAGAAAGTACCCAAAGCCTAATGAACATTGCAAAACAAATGAATATTGCAACATTTATCGTTG
GACACGTGACGAAGGAAGGACAAATTGCTGGCCCAAGGTTGTTAGAACATATGGTTGATACCGTACTCTACTTTGAAGGT
GATGAGCACCATGCTTATCGTATATTAAGAGCAGTTAAGAACCGTTTTGGTTCAACAAATGAGATGGGTATTTTCGAGAT
GAAACAAAGCGGTTTGAAAGGAGTCAAAAATCCTTCTGAAATGTTCTTAGAAGAACGGTCAACGAATGTACCTGGATCTA
CAATCGTCTCTACGATGGAAGGTACGAGACCGCTACTCATAGAAGTTCAAGCGTTAGTTACTCCTACGACATTTAACAAC
CCGAGACGTATGGCTACAGGCATTGATCATAATCGATTGAGTTTATTGATGGCCGTCTTGGAGAAGAAAGAAAATTATTT
ATTACAACAACAAGATGCATATATTAAAGTTGCTGGTGGGGTTAGACTGACCGAACCTGCAGTAGATTTAAGTATTATTG
TAGCTACAGCCTCAAGCTTCAAAGATAAAGCAGTCGATGGGCTAGATTGTTACATCGGTGAAGTAGGTTTAACAGGAGAA
GTTCGCCGTGTGTCACGTATTGAACAACGTGTGCAAGAAGCGGCTAAATTAGGTTTCAAGAGAGTCATTATTCCAAAGAC
GAATATCGGTGGCTGGCAGTTCCCAGAAGATATTAAAGTTATAGGAGTGGAAAATGTTCATGATGCTTTAAAATATGCAA
TTTCAAAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(357-428)

AAA domain (AAA_25)

(69-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.474

100

0.645
  radA Streptococcus pneumoniae Rx1

59.202

98.904

0.586
  radA Streptococcus pneumoniae D39

59.202

98.904

0.586
  radA Streptococcus pneumoniae R6

59.202

98.904

0.586
  radA Streptococcus pneumoniae TIGR4

59.202

98.904

0.586
  radA Streptococcus mitis NCTC 12261

59.202

98.904

0.586
  radA Streptococcus mitis SK321

59.202

98.904

0.586