Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAL98_RS00885 Genome accession   NZ_CP132544
Coordinates   151368..151772 (-) Length   134 a.a.
NCBI ID   WP_251518265.1    Uniprot ID   -
Organism   Staphylococcus sp. HKU1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 146368..156772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL98_RS00860 (RAL98_00860) thiE 146924..147565 (-) 642 WP_418128871.1 thiamine phosphate synthase -
  RAL98_RS00865 (RAL98_00865) thiM 147568..148365 (-) 798 WP_251518269.1 hydroxyethylthiazole kinase -
  RAL98_RS00870 (RAL98_00870) thiD 148355..149176 (-) 822 WP_251518268.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RAL98_RS00875 (RAL98_00875) tenA 149169..149858 (-) 690 WP_251518267.1 thiaminase II -
  RAL98_RS00880 (RAL98_00880) - 150186..150878 (-) 693 WP_251518266.1 transglycosylase family protein -
  RAL98_RS00885 (RAL98_00885) ssb 151368..151772 (-) 405 WP_251518265.1 single-stranded DNA-binding protein Machinery gene
  RAL98_RS00890 (RAL98_00890) - 151962..152408 (+) 447 WP_251518264.1 YwpF-like family protein -
  RAL98_RS00895 (RAL98_00895) fabZ 152627..153067 (-) 441 WP_251518263.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RAL98_RS00900 (RAL98_00900) murA 153132..154397 (-) 1266 WP_251518262.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RAL98_RS00905 (RAL98_00905) - 154487..154720 (-) 234 WP_251518261.1 DUF1146 family protein -
  RAL98_RS00910 (RAL98_00910) - 155083..155487 (-) 405 WP_251518260.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15687.81 Da        Isoelectric Point: 5.2534

>NTDB_id=869371 RAL98_RS00885 WP_251518265.1 151368..151772(-) (ssb) [Staphylococcus sp. HKU1]
MINNIVIVGRLTKDPKLFEKEETYLTTFCVAVERNYKDRNQNNIVDFIYCKSFGKVAQNIVKYVNQGSLVAITGQMQSRK
YVKDDQTHFISELYVETIKFLTSKHKDEIEPHTTKDNQEILEDTIQDSDLYEII

Nucleotide


Download         Length: 405 bp        

>NTDB_id=869371 RAL98_RS00885 WP_251518265.1 151368..151772(-) (ssb) [Staphylococcus sp. HKU1]
ATGATTAATAATATCGTTATCGTCGGACGATTGACGAAAGACCCAAAGTTGTTCGAAAAAGAGGAAACCTATTTAACAAC
ATTTTGTGTAGCTGTCGAAAGGAATTATAAGGATAGAAATCAAAATAACATAGTTGATTTTATTTATTGTAAATCTTTTG
GCAAGGTAGCTCAGAACATTGTTAAGTATGTCAATCAAGGATCGCTTGTCGCAATAACTGGTCAAATGCAATCAAGAAAA
TACGTTAAAGACGATCAAACACATTTTATTTCCGAGTTATACGTTGAAACAATTAAGTTTTTAACTTCAAAGCACAAGGA
TGAAATCGAACCCCACACTACAAAAGATAATCAAGAAATCCTCGAAGACACGATACAAGACAGTGACTTGTACGAAATCA
TTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

58.915

96.269

0.567
  ssb Staphylococcus aureus MW2

58.14

96.269

0.56