Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LACPH_RS00045 Genome accession   NZ_CP132482
Coordinates   10478..11071 (+) Length   197 a.a.
NCBI ID   WP_010490295.1    Uniprot ID   A0AAN1C5F0
Organism   Lacticaseibacillus parahuelsenbergensis strain NCIMB 15471     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5478..16071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPH_RS00030 (LACPH_000006) gyrA 6798..9422 (+) 2625 WP_274784073.1 DNA gyrase subunit A -
  LACPH_RS00035 (LACPH_000007) ssb 9594..10025 (+) 432 WP_087911228.1 single-stranded DNA-binding protein -
  LACPH_RS00040 (LACPH_000008) rpsF 10152..10448 (+) 297 WP_010490297.1 30S ribosomal protein S6 -
  LACPH_RS00045 (LACPH_000009) ssb 10478..11071 (+) 594 WP_010490295.1 single-stranded DNA-binding protein Machinery gene
  LACPH_RS00050 (LACPH_000010) rpsR 11161..11397 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  LACPH_RS00055 (LACPH_000011) - 11477..11983 (-) 507 WP_025013654.1 type 1 glutamine amidotransferase domain-containing protein -
  LACPH_RS00060 (LACPH_000012) - 12341..13819 (+) 1479 WP_070651037.1 cytochrome ubiquinol oxidase subunit I -
  LACPH_RS00065 (LACPH_000013) cydB 13812..14831 (+) 1020 WP_010490252.1 cytochrome d ubiquinol oxidase subunit II -
  LACPH_RS00070 (LACPH_000014) - 15064..15258 (+) 195 WP_010490250.1 hypothetical protein -
  LACPH_RS00075 (LACPH_000015) - 15708..15926 (+) 219 WP_274784074.1 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21090.81 Da        Isoelectric Point: 4.9056

>NTDB_id=869177 LACPH_RS00045 WP_010490295.1 10478..11071(+) (ssb) [Lacticaseibacillus parahuelsenbergensis strain NCIMB 15471]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQQPQNPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=869177 LACPH_RS00045 WP_010490295.1 10478..11071(+) (ssb) [Lacticaseibacillus parahuelsenbergensis strain NCIMB 15471]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGACACATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGCTGGAATCACGGGC
AACGACACAACAACGGCCGTCCGAACCTGCGAATCCCGCTGGCCAAGGCAACCAGAATTATGGCGGTGGGCAGCAGTTTG
GTAATAACCAGCAGCCGCAAAACCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCACCATCATCGAATCCGGGC
CAAAACCCGGCAGCAGGTCAAAGCCAAGGCAACAATGGCAATGCTGCTAATCCCGATCCTTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.406

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.492