Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RAM43_RS08335 Genome accession   NZ_CP132394
Coordinates   1705827..1706714 (-) Length   295 a.a.
NCBI ID   WP_063278812.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain CUVET18-689     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1700827..1711714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM43_RS08320 (RAM43_08260) xerC 1701331..1702242 (-) 912 WP_371277533.1 tyrosine recombinase XerC -
  RAM43_RS08325 (RAM43_08265) trmFO 1702342..1703646 (-) 1305 WP_014614087.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RAM43_RS08330 (RAM43_08270) topA 1703674..1705743 (-) 2070 WP_065520519.1 type I DNA topoisomerase -
  RAM43_RS08335 (RAM43_08275) dprA 1705827..1706714 (-) 888 WP_063278812.1 DNA-processing protein DprA Machinery gene
  RAM43_RS08340 (RAM43_08280) sucD 1706953..1707858 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  RAM43_RS08345 (RAM43_08285) sucC 1707880..1709046 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  RAM43_RS08350 (RAM43_08290) - 1709313..1709588 (-) 276 WP_015729039.1 hypothetical protein -
  RAM43_RS08355 (RAM43_08295) - 1709680..1710465 (-) 786 WP_037543184.1 ribonuclease HII -
  RAM43_RS08360 (RAM43_08300) ylqF 1710458..1711330 (-) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33494.99 Da        Isoelectric Point: 8.4807

>NTDB_id=869067 RAM43_RS08335 WP_063278812.1 1705827..1706714(-) (dprA) [Staphylococcus pseudintermedius strain CUVET18-689]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=869067 RAM43_RS08335 WP_063278812.1 1705827..1706714(-) (dprA) [Staphylococcus pseudintermedius strain CUVET18-689]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCACACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495