Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   WHQ25_RS06225 Genome accession   NZ_CP148254
Coordinates   1195793..1196659 (-) Length   288 a.a.
NCBI ID   WP_002856218.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1190793..1201659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ25_RS06205 (WHQ25_06205) metF 1192646..1193494 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  WHQ25_RS06210 (WHQ25_06210) - 1193516..1193707 (-) 192 WP_002852856.1 membrane protein -
  WHQ25_RS06215 (WHQ25_06215) atpB 1193704..1194384 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  WHQ25_RS06220 (WHQ25_06220) radA/sms 1194453..1195793 (-) 1341 WP_002856363.1 DNA repair protein RadA Machinery gene
  WHQ25_RS06225 (WHQ25_06225) pilA 1195793..1196659 (-) 867 WP_002856218.1 signal recognition particle-docking protein FtsY Machinery gene
  WHQ25_RS06230 (WHQ25_06230) - 1196659..1197216 (-) 558 WP_002867374.1 TlpA disulfide reductase family protein -
  WHQ25_RS06235 (WHQ25_06235) - 1197299..1197925 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  WHQ25_RS06240 (WHQ25_06240) rny 1197846..1199399 (+) 1554 WP_002867373.1 ribonuclease Y -
  WHQ25_RS06245 (WHQ25_06245) - 1199408..1199965 (+) 558 WP_002852823.1 DedA family protein -
  WHQ25_RS06250 (WHQ25_06250) - 1199965..1201224 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32049.03 Da        Isoelectric Point: 5.5179

>NTDB_id=869045 WHQ25_RS06225 WP_002856218.1 1195793..1196659(-) (pilA) [Campylobacter jejuni strain Z1323CCJ0004]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=869045 WHQ25_RS06225 WP_002856218.1 1195793..1196659(-) (pilA) [Campylobacter jejuni strain Z1323CCJ0004]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAATGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437