Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   WHQ25_RS06220 Genome accession   NZ_CP148254
Coordinates   1194453..1195793 (-) Length   446 a.a.
NCBI ID   WP_002856363.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1189453..1200793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ25_RS06195 (WHQ25_06195) - 1189590..1190360 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  WHQ25_RS06200 (WHQ25_06200) metE 1190372..1192636 (+) 2265 WP_002860435.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  WHQ25_RS06205 (WHQ25_06205) metF 1192646..1193494 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  WHQ25_RS06210 (WHQ25_06210) - 1193516..1193707 (-) 192 WP_002852856.1 membrane protein -
  WHQ25_RS06215 (WHQ25_06215) atpB 1193704..1194384 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  WHQ25_RS06220 (WHQ25_06220) radA/sms 1194453..1195793 (-) 1341 WP_002856363.1 DNA repair protein RadA Machinery gene
  WHQ25_RS06225 (WHQ25_06225) pilA 1195793..1196659 (-) 867 WP_002856218.1 signal recognition particle-docking protein FtsY Machinery gene
  WHQ25_RS06230 (WHQ25_06230) - 1196659..1197216 (-) 558 WP_002867374.1 TlpA disulfide reductase family protein -
  WHQ25_RS06235 (WHQ25_06235) - 1197299..1197925 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  WHQ25_RS06240 (WHQ25_06240) rny 1197846..1199399 (+) 1554 WP_002867373.1 ribonuclease Y -
  WHQ25_RS06245 (WHQ25_06245) - 1199408..1199965 (+) 558 WP_002852823.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48994.93 Da        Isoelectric Point: 7.5635

>NTDB_id=869044 WHQ25_RS06220 WP_002856363.1 1194453..1195793(-) (radA/sms) [Campylobacter jejuni strain Z1323CCJ0004]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAERIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLGIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=869044 WHQ25_RS06220 WP_002856363.1 1194453..1195793(-) (radA/sms) [Campylobacter jejuni strain Z1323CCJ0004]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCCTGTGGAAATCAACAAAGTAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCGGATTAAAGTTTTAAAAGAGCTTGCACAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGTGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTAAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCTACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGGAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTATTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCCAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-423)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.586

97.534

0.464
  radA Streptococcus pneumoniae Rx1

45.909

98.655

0.453
  radA Streptococcus pneumoniae D39

45.909

98.655

0.453
  radA Streptococcus pneumoniae R6

45.909

98.655

0.453
  radA Streptococcus pneumoniae TIGR4

45.909

98.655

0.453
  radA Streptococcus mitis SK321

45.89

98.206

0.451
  radA Streptococcus mitis NCTC 12261

45.89

98.206

0.451